LOC113532857


Basic Information

Item Value
gene id LOC113532857
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5236219 ~ 5240172 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034297950.1
TAGATCGTGTATGAACAAGAAGCTGAAATAAGAACAATTTCGTTGAGGTTTTTTCGTCTGAAGAAGTGAAACAGAAGCCACATAAACTCGTTAGTAAGTGTGTAGCTGATGAGGCTCTAGCTATGGCGTCTAAACGTTCCTTCTCTGAAGAGGACTTCACGTGCcctgtgtgttgtgatgtgtttaagGAGCCCGTGCTCCTGTCGTGCGGTCACAGCGCGTGCAGCACCTGCGTTCACCGGTACTGGGATGTCAAAGGCTGCCGAGAATGTCCACTTTGCAGGAAACGATCTGCTAGAAACCCTACTATCAACCTGGCTCTGAAAAACCTGTGTCAGACCTTCCTGGAGGTCCGAGGTGATCCCGAGACACTCTGTGACATCCATGGAGAAAAGCTGAAACTTTTCTGTGTGAATGACGGACAGGCCGCGTGCTTGGTGTGCAGAGATTCCAGCAAACACCTACAGCACCAATTCATTCCTGTCGACGAAGCAGCTGCTGAACAAAAGCATTTTCTTACAACTGGACTgaataaattgaaattaaaaatgaagagCCTTGAAGATCTCCAGTTTCATTGCCATCAAAATGTAGATCACATAAAGCAACAGGCCAAGTACATAAAGAATCAGATGAATGTCGAGATTCAGGAACTTGTGCAGTTTCTTATGGCGGAAAATGTAGCCATGGTGAGCAAACTGGAGGAGGAGGTGCAGGAGAAATTGCAGTCGgtggaaaacaaaataaaaaatatcagacaaaaaaaacagtctatCTCACGCACCATTGGAGtcataaaaaatgatttacaatCTGAAGACATCAAATTCCTGAAGCATGACCTTAAGAAGTATCTGACAAAgactcAGGGCAGAGATTCAAATTCCATTGTGAAGAAGAACCTTGATTCAAAATTGGTTTCAAAAGAAGTGATTGATGTTGCAAAGTACCTGGGTAATCTACAGTTCAGAGTCTGGAACAAAATGCAGACCGCTATTAAATACACTCCTGTTGTTTTGGATCCAAACACAGCTCACTCGCAGCTCATCCTGTCCCCGGATCTGACCAGCGTGAGAGACAGTGATGATGACCACGAAGACCAGGCTGACAAGCCGAGACCTCCAGTTTTGGACACTCCTGAGCGGTTTAGGAGTTTGTGTGTCCTGGGGTCTGAGGGCTTCTCTTCGGGGCTGCACTGTTGGGATGTTGAGGTGGGAAACAGCACCTTCTGGATGCTTGGAGTGACCACTGAGACTGTTCAGAGAAAAGAACCCAATGTTTTTCCCAGAGGAGCTTGGGGTATTGGGTATGATGGTGAAAAGCTGTGTGCTCGATCCCCTTTGGAAGTGTATACTCCTCTCACTTTGGCTGCCAAACCCCAGATGGTCAGAATTCGTCTGGACATGGATTTAGGGGAGGTGTGGTTCTTAGATCCTGCCAGTAATGACATTATCCACATGTTCTCACACCAGTTCACTGGGAAGGTCTTTCCCTTCTTCCACAGCATGTGCAGTCTATCTCCTCTGAAGATTATGCCTCTCAAGCATTTTGTGGTGCTGAGAGACATCCCTTAATGCTCATGTTTCTACAAGTGATAAGTGGCAGTGGCTCACATTCTCAACTATAGTCCATATTtaaagctgtaatgtttttattctgttgtAGCAACAGATCTGTTGTAGATGTGGCGATATGGAGAATGTGAAGTATTATTCAACTGTACATGTCAATACAGTTCGTTTTGTTTTCTGTACCTTTCATGGCTAAAGGAGAAAAAGATGGAGCTGTATGACAGGATATATTGCATCAAGTGTTTGTTCACATTTAGACATAATGCTGTTGCACTTTAAAACTTGTCTTCTATATCTTGTGCTTTACTATATTctaatatttcaatttaaactGTGTGAGTTATTAGTCATAACTTAGCTCAGGTGATATTGTTCCATTCTCATCCTGGTTCTCCCCTAGTTTACCTGggtggaagtgtttttttttttcttttcttttttgtctgttttattttggcGGTATTTTCCCACTCTGAAATGGCACAGATTTCCAGAAACAAACATGAATAACACTAAATGCTATCTCAAATACCAGTTGTTGCAAAGCAAACTTGGATTCAAAAATGGTTGTAACCTTTCCAAGGTTATTTGTTTCCTAAAATAGCCCAAAAAATAGTTATGTTTCCTGCAATTACTGTGTCATTCTTCTTTGTgtcatatattaaatattatccCAAAGTGTTTCCATTCTAATGGGAGAAGTGATATTGAATGCCATTCTTTAAAACCTCATGTCACCTTCTGGCAAATCACAATGCAGGAGGCAGGCAACAGTCTGTAAATGAGACTTTATAATAGCTATTATAAAACTCTTATATTGGCTATATAATGACTCTTTTGTGGGGTAGGGCATGACTTTTA
>XM_034297951.1
TAGATCGTGTATGAACAAGAAGCTGAAATAAGAACAATTTCGTTGAGGTTTTTTCGTCTGAAGAAGTGAAACAGAAGCCACATAAACTCGTTAGTAAGTGTGTAGCTGATGAGGCTCTAGCTATGGCGTCTAAACGTTCCTTCTCTGAAGAGGACTTCACGTGCcctgtgtgttgtgatgtgtttaagGAGCCCGTGCTCCTGTCGTGCGGTCACAGCGCGTGCAGCACCTGCGTTCACCGGTACTGGGATGTCAAAGGCTGCCGAGAATGTCCACTTTGCAGGAAACGATCTGCTAGAAACCCTACTATCAACCTGGCTCTGAAAAACCTGTGTCAGACCTTCCTGGAGGTCCGAGGTGATCCCGAGACACTCTGTGACATCCATGGAGAAAAGCTGAAACTTTTCTGTGTGAATGACGGACAGGCCGCGTGCTTGGTGTGCAGAGATTCCAGCAAACACCTACAGCACCAATTCATTCCTGTCGACGAAGCAGCTGCTGAACAAAAGCATTTTCTTACAACTGGACTgaataaattgaaattaaaaatgaagagCCTTGAAGATCTCCAGTTTCATTGCCATCAAAATGTAGATCACATAAAGGCCAAGTACATAAAGAATCAGATGAATGTCGAGATTCAGGAACTTGTGCAGTTTCTTATGGCGGAAAATGTAGCCATGGTGAGCAAACTGGAGGAGGAGGTGCAGGAGAAATTGCAGTCGgtggaaaacaaaataaaaaatatcagacaaaaaaaacagtctatCTCACGCACCATTGGAGtcataaaaaatgatttacaatCTGAAGACATCAAATTCCTGAAGCATGACCTTAAGAAGTATCTGACAAAgactcAGGGCAGAGATTCAAATTCCATTGTGAAGAAGAACCTTGATTCAAAATTGGTTTCAAAAGAAGTGATTGATGTTGCAAAGTACCTGGGTAATCTACAGTTCAGAGTCTGGAACAAAATGCAGACCGCTATTAAATACACTCCTGTTGTTTTGGATCCAAACACAGCTCACTCGCAGCTCATCCTGTCCCCGGATCTGACCAGCGTGAGAGACAGTGATGATGACCACGAAGACCAGGCTGACAAGCCGAGACCTCCAGTTTTGGACACTCCTGAGCGGTTTAGGAGTTTGTGTGTCCTGGGGTCTGAGGGCTTCTCTTCGGGGCTGCACTGTTGGGATGTTGAGGTGGGAAACAGCACCTTCTGGATGCTTGGAGTGACCACTGAGACTGTTCAGAGAAAAGAACCCAATGTTTTTCCCAGAGGAGCTTGGGGTATTGGGTATGATGGTGAAAAGCTGTGTGCTCGATCCCCTTTGGAAGTGTATACTCCTCTCACTTTGGCTGCCAAACCCCAGATGGTCAGAATTCGTCTGGACATGGATTTAGGGGAGGTGTGGTTCTTAGATCCTGCCAGTAATGACATTATCCACATGTTCTCACACCAGTTCACTGGGAAGGTCTTTCCCTTCTTCCACAGCATGTGCAGTCTATCTCCTCTGAAGATTATGCCTCTCAAGCATTTTGTGGTGCTGAGAGACATCCCTTAATGCTCATGTTTCTACAAGTGATAAGTGGCAGTGGCTCACATTCTCAACTATAGTCCATATTtaaagctgtaatgtttttattctgttgtAGCAACAGATCTGTTGTAGATGTGGCGATATGGAGAATGTGAAGTATTATTCAACTGTACATGTCAATACAGTTCGTTTTGTTTTCTGTACCTTTCATGGCTAAAGGAGAAAAAGATGGAGCTGTATGACAGGATATATTGCATCAAGTGTTTGTTCACATTTAGACATAATGCTGTTGCACTTTAAAACTTGTCTTCTATATCTTGTGCTTTACTATATTctaatatttcaatttaaactGTGTGAGTTATTAGTCATAACTTAGCTCAGGTGATATTGTTCCATTCTCATCCTGGTTCTCCCCTAGTTTACCTGggtggaagtgtttttttttttcttttcttttttgtctgttttattttggcGGTATTTTCCCACTCTGAAATGGCACAGATTTCCAGAAACAAACATGAATAACACTAAATGCTATCTCAAATACCAGTTGTTGCAAAGCAAACTTGGATTCAAAAATGGTTGTAACCTTTCCAAGGTTATTTGTTTCCTAAAATAGCCCAAAAAATAGTTATGTTTCCTGCAATTACTGTGTCATTCTTCTTTGTgtcatatattaaatattatccCAAAGTGTTTCCATTCTAATGGGAGAAGTGATATTGAATGCCATTCTTTAAAACCTCATGTCACCTTCTGGCAAATCACAATGCAGGAGGCAGGCAACAGTCTGTAAATGAGACTTTATAATAGCTATTATAAAACTCTTATATTGGCTATATAATGACTCTTTTGTGGGGTAGGGCATGACTTTTA
>XM_034297952.1
TAGATCGTGTATGAACAAGAAGCTGAAATAAGAACAATTTCGTTGAGGTTTTTTCGTCTGAAGAAGTGAAACAGAAGCCACATAAACTCGTTAGTAAGTGTGTAGCTGATGAGGCTCTAGCTATGGCGTCTAAACGTTCCTTCTCTGAAGAGGACTTCACGTGCcctgtgtgttgtgatgtgtttaagGAGCCCGTGCTCCTGTCGTGCGGTCACAGCGCGTGCAGCACCTGCGTTCACCGGTACTGGGATGTCAAAGGCTGCCGAGAATGTCCACTTTGCAGGAAACGATCTGCTAGAAACCCTACTATCAACCTGGCTCTGAAAAACCTGTGTCAGACCTTCCTGGAGGTCCGAGGTGATCCCGAGACACTCTGTGACATCCATGGAGAAAAGCTGAAACTTTTCTGTGTGAATGACGGACAGGCCGCGTGCTTGGTGTGCAGAGATTCCAGCAAACACCTACAGCACCAATTCATTCCTGTCGACGAAGCAGCTGCTGAACAAAAGagCCTTGAAGATCTCCAGTTTCATTGCCATCAAAATGTAGATCACATAAAGCAACAGGCCAAGTACATAAAGAATCAGATGAATGTCGAGATTCAGGAACTTGTGCAGTTTCTTATGGCGGAAAATGTAGCCATGGTGAGCAAACTGGAGGAGGAGGTGCAGGAGAAATTGCAGTCGgtggaaaacaaaataaaaaatatcagacaaaaaaaacagtctatCTCACGCACCATTGGAGtcataaaaaatgatttacaatCTGAAGACATCAAATTCCTGAAGCATGACCTTAAGAAGTATCTGACAAAgactcAGGGCAGAGATTCAAATTCCATTGTGAAGAAGAACCTTGATTCAAAATTGGTTTCAAAAGAAGTGATTGATGTTGCAAAGTACCTGGGTAATCTACAGTTCAGAGTCTGGAACAAAATGCAGACCGCTATTAAATACACTCCTGTTGTTTTGGATCCAAACACAGCTCACTCGCAGCTCATCCTGTCCCCGGATCTGACCAGCGTGAGAGACAGTGATGATGACCACGAAGACCAGGCTGACAAGCCGAGACCTCCAGTTTTGGACACTCCTGAGCGGTTTAGGAGTTTGTGTGTCCTGGGGTCTGAGGGCTTCTCTTCGGGGCTGCACTGTTGGGATGTTGAGGTGGGAAACAGCACCTTCTGGATGCTTGGAGTGACCACTGAGACTGTTCAGAGAAAAGAACCCAATGTTTTTCCCAGAGGAGCTTGGGGTATTGGGTATGATGGTGAAAAGCTGTGTGCTCGATCCCCTTTGGAAGTGTATACTCCTCTCACTTTGGCTGCCAAACCCCAGATGGTCAGAATTCGTCTGGACATGGATTTAGGGGAGGTGTGGTTCTTAGATCCTGCCAGTAATGACATTATCCACATGTTCTCACACCAGTTCACTGGGAAGGTCTTTCCCTTCTTCCACAGCATGTGCAGTCTATCTCCTCTGAAGATTATGCCTCTCAAGCATTTTGTGGTGCTGAGAGACATCCCTTAATGCTCATGTTTCTACAAGTGATAAGTGGCAGTGGCTCACATTCTCAACTATAGTCCATATTtaaagctgtaatgtttttattctgttgtAGCAACAGATCTGTTGTAGATGTGGCGATATGGAGAATGTGAAGTATTATTCAACTGTACATGTCAATACAGTTCGTTTTGTTTTCTGTACCTTTCATGGCTAAAGGAGAAAAAGATGGAGCTGTATGACAGGATATATTGCATCAAGTGTTTGTTCACATTTAGACATAATGCTGTTGCACTTTAAAACTTGTCTTCTATATCTTGTGCTTTACTATATTctaatatttcaatttaaactGTGTGAGTTATTAGTCATAACTTAGCTCAGGTGATATTGTTCCATTCTCATCCTGGTTCTCCCCTAGTTTACCTGggtggaagtgtttttttttttcttttcttttttgtctgttttattttggcGGTATTTTCCCACTCTGAAATGGCACAGATTTCCAGAAACAAACATGAATAACACTAAATGCTATCTCAAATACCAGTTGTTGCAAAGCAAACTTGGATTCAAAAATGGTTGTAACCTTTCCAAGGTTATTTGTTTCCTAAAATAGCCCAAAAAATAGTTATGTTTCCTGCAATTACTGTGTCATTCTTCTTTGTgtcatatattaaatattatccCAAAGTGTTTCCATTCTAATGGGAGAAGTGATATTGAATGCCATTCTTTAAAACCTCATGTCACCTTCTGGCAAATCACAATGCAGGAGGCAGGCAACAGTCTGTAAATGAGACTTTATAATAGCTATTATAAAACTCTTATATTGGCTATATAATGACTCTTTTGTGGGGTAGGGCATGACTTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034297950.1 True 2432 mRNA 0.42 6 5236219 5240172
XM_034297951.1 False 2426 mRNA 0.42 6 5236219 5240172
XM_034297952.1 False 2387 mRNA 0.42 6 5236219 5240172

Neighbor

gene id symbol gene type direction distance location
LOC113532508 LOC108256086 coding upstream 2170 5228577 ~ 5234049 (+)
ncam3 NA coding upstream 32815 5190018 ~ 5203404 (+)
tmem147 tmem147,LOC106605633,LOC107666831 coding upstream 85992 5144970 ~ 5150227 (+)
nkd2b nkd2 coding upstream 95412 5111073 ~ 5140807 (+)
trip13 trip13,LOC107754445,LOC107677654,LOC107659068,LOC107729803,LOC107736543 coding upstream 130797 5097141 ~ 5105422 (+)
LOC113532629 LOC108256652,LOC108256651 coding downstream 963 5241135 ~ 5248144 (+)
LOC113532776 LOC108256651 coding downstream 8738 5248910 ~ 5254552 (+)
LOC113532775 LOC108256159 coding downstream 14514 5254686 ~ 5258559 (+)
fam171a1 fam171a1 coding downstream 20266 5260438 ~ 5294743 (+)
nmt2 nmt2,LOC107738873,LOC107681575 coding downstream 58130 5298302 ~ 5307139 (+)
G326462 LOC108256729,LOC108426375 non-coding upstream 206429 5019782 ~ 5029790 (+)
G326458 NA non-coding upstream 252539 4983473 ~ 4983680 (+)
G326440 NA non-coding upstream 311583 4924178 ~ 4924636 (+)
G326429 NA non-coding upstream 432160 4803837 ~ 4804059 (+)
LOC113532560 NA non-coding upstream 432708 4800572 ~ 4803511 (+)
G327071 NA non-coding downstream 301186 5541358 ~ 5541889 (+)
G327178 NA non-coding downstream 365698 5605870 ~ 5607099 (+)
G327385 zfpm2 non-coding downstream 592821 5832993 ~ 5833262 (+)
G327391 NA non-coding downstream 602047 5842219 ~ 5842438 (+)
G328024 NA non-coding downstream 1408108 6648280 ~ 6708779 (+)
klf10 LOC108256604 other upstream 246903 4984415 ~ 4989316 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other upstream 306064 4924781 ~ 4930155 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other upstream 312538 4920980 ~ 4923681 (+)
LOC113532991 LOC108256125 other upstream 801968 4398659 ~ 4434251 (+)
hmgn2 NA other upstream 841435 4391520 ~ 4394784 (+)
acbd7 acbd7,LOC108256514 other downstream 71037 5311209 ~ 5314614 (+)
G326997 NA other downstream 92096 5332268 ~ 5338251 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 other downstream 1983850 7224022 ~ 7247279 (+)
LOC113532663 NA other downstream 2661343 7901515 ~ 7902608 (+)
osr2 osr2,LOC106591507 other downstream 3132513 8372685 ~ 8378896 (+)

Expression


Co-expression Network