LOC117595668


Basic Information

Item Value
gene id LOC117595668
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 15285508 ~ 15288765 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034297961.1
ACACACGCAGAGATAcgcactcagacacacacacactcacacacacacacacacccaggcttCTACAGTCTGCCTCATCCAGCCAGAATGCGCTTGCCTTTCTCCAAACACCCCTCCTCTCGGAGGAGCTCTACCGCTTCCTGCTGTCCGGTGATGGCGGGTTCCGCGGTCATTTACTGCGTCACGTGCGATCAGCCGCTCAGCAGCCGCTGCGTCATTAACGGCGCGCACCGGGACCACCGGCTGAAGGACCTGAAGGAGGCCGTGCACGATCAAGTGAAAAGATTAAATGACCTTTCCGGGAAGCTGACATCCAAAGAAAGGAAGTTTGGCGACATCACACCAAGGATTGAAGCAGCAGAGCGCGAGCTCGAGGAGATATGCAACCGGACACATGAGCTGCTTCAGCACGAGTACAGTACCCTGATGAATTTGATCGAGCAGAATCAGCAGCAGGCCTTTTTCATCCTGAATGTGCAGAAGGAAACAATAAAGCGGCAACTCCAGCAGCTGCACGAGGACACACAGAACTACCAGAGCAAGTCCACAGCCATGGCCGAGGACATAAAACAGCTCAGCAGCAGAGAGGAGAGCGACAACCCAGCCAGCCTGCTGGGAGAGATCAGCGCACTTGAGACCAGCTTGCACACGATGAACGAGTTTTACTCCTCTGTGGACAAGAAGCTGAAAGTCGATGACACAAGACTGAAAGCTCTGGAAAACTCCATTAAGAAAATCGTGGACAAAAACAGAGACCTTCTGCCACGGCCATGGGAATTCTCGGAGACCATCACTTTGGATCAGAATAAAAATCAAGGCAATGTCCAGATCTCAGAGGACAAGTTGGAGATGTCAGTGAGCCCTTCAGACTGTCTGGGCCTTACTGCTCGCTCATCATGGTGCACCATGCGGGCATCTCAGAGCTTCAGTGAAGGCCTGCATTACTGGGAGGTGGCAGTAGGAGGCTGTGAGAGCTGGGCGGTGGGCATAGCAGAACAAAGCCGGGTTAGAGGCATCCAAACTCAGGCTGCGAGCCAGGAAAAGAATTTGTGGATTCTGGAGTGCGATGGTGGTGAGCTCTCAGTGCTGCACAACAACGACTTCAGCAGGGTCAAGGAGAACAATATTCAAACCCTTGGCGTCTTCCTGGATTGGAGTAAAGGGCGACTGAAGTTCTACAATGTCAATACAGGCAACATCCTGCACTCATTTATTGCCCAGTTCAAGCACGCCGTTTATCCCACGTTCCGCATTCGTGCACAGAAAGACAGTGTGGCACGGCTGAAGATCTGCAACCTGATGCACCAAGATGAAGGGCACTACGACAGCGTCAGTACCTCCGTAATCTCAGAGATGCCAATTGAGGAGGCTATGGAGTTGTCTTCTGAGGGCTCACATTAggacatgattttaaaatgttaacatgTGTAACAATGCTaacatgcatatttattttaactactgtctatttattaaaatgcagtgtTATGAAGGAAGAGTTAATGACATTTATCAGtaaatgctgtttatttgtGTAGACCACTGTACAAATGttgctgttttattaaatgtttgaatAATGTCTCAACAGACTATGgctcattttcttgttttattggtGTTTAAAGCTctttttaggatttttcttctcctttaaATCCTTAAAAGCTTTAAATCAAGTGGTACTCTAAGTGCTCCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034297961.1 True 1700 mRNA 0.48 6 15285508 15288765

Neighbor

gene id symbol gene type direction distance location
LOC113541332 NA coding downstream 1353 15276583 ~ 15284155 (-)
LOC117595763 LOC108256304 coding downstream 10432 15273126 ~ 15275076 (-)
LOC117595804 NA coding downstream 16244 15267358 ~ 15269264 (-)
rdh10a rdh10a,rdh10,LOC108256305,LOC107560263,LOC107725699,LOC107754204,LOC107657826,LOC107696016 coding downstream 40483 15229216 ~ 15245025 (-)
dcaf11 dcaf11 coding downstream 164590 15111698 ~ 15120918 (-)
LOC113541204 LOC108256300 coding upstream 48614 15337379 ~ 15380275 (-)
LOC113541141 LOC108256549 coding upstream 109516 15398281 ~ 15414443 (-)
LOC113541144 cntnap2,cntnap2a,LOC108256478,LOC108256479,LOC108256453 coding upstream 128339 15417104 ~ 15559455 (-)
LOC113541101 NA coding upstream 290510 15579275 ~ 15582034 (-)
LOC113541299 cntnap2,cntnap2a,LOC108256479,LOC108256478,LOC108256453 coding upstream 488256 15777021 ~ 15899598 (-)
G332196 NA non-coding downstream 488310 14714217 ~ 14797198 (-)
G332164 NA non-coding downstream 650582 14544032 ~ 14634926 (-)
G332147 NA non-coding downstream 720804 14537252 ~ 14564704 (-)
G332169 NA non-coding downstream 762893 14513735 ~ 14522615 (-)
G332056 NA non-coding downstream 818895 14466394 ~ 14466613 (-)
G332580 NA non-coding upstream 56507 15345272 ~ 15397132 (-)
G332637 NA non-coding upstream 277422 15566187 ~ 15566646 (-)
G332676 NA non-coding upstream 331741 15620506 ~ 15620717 (-)
G332682 NA non-coding upstream 341458 15630223 ~ 15630444 (-)
LOC113541266 NA non-coding upstream 647063 15935828 ~ 15943189 (-)
LOC113541115 kcnb2,si:dkey-192j17.1,LOC107657825,LOC107560266,LOC108426548,LOC107754205,LOC107589933 other downstream 219698 14962837 ~ 15065810 (-)
LOC113541102 msc other downstream 348104 14932995 ~ 14937404 (-)
LOC113541105 NA other downstream 1522893 13757658 ~ 13762615 (-)
LOC113541288 NA other downstream 2607570 12676545 ~ 12677938 (-)
cdv3 cdv3 other downstream 3288808 11944054 ~ 11996700 (-)
sec61g NA other upstream 326733 15615498 ~ 15618842 (-)
cpa6 cpa6,LOC106579545 other upstream 992506 16281271 ~ 16312916 (-)
oxsr1b oxsr1,oxsr1b other upstream 1541025 16829790 ~ 16879884 (-)
myd88 myd88 other upstream 1596386 16885151 ~ 16889424 (-)
zbtb47b zbtb47,znf652,LOC108256615 other upstream 1827333 17116098 ~ 17139685 (-)

Expression


Co-expression Network