mtfr1 (mtfr1)


Basic Information

Item Value
gene id mtfr1
gene name mtfr1
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18315354 ~ 18323295 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298031.1
CTATTGGCTCTTGGGTGACGTCTCTTTGAGAAACAGTTTTTCGTTAGCAACAAACGGTGTTGTTGAGTTAACGAACtggaaaaaaacagctgttcGGCGCAGATGGAGGTAAACCGGGTGTAGCAGATTGACTCCGGGTCAGTTTGAAGATTAGATAAGTTTgtgACCGAGGTGAGGCACTCAGCATGGCAGAACATCACAGAGCAGTTTTAAGCGACTCGGTGTGACGATGAGAAGGAACGATGCGAGGATAGAGATGGACCTGGCTTTTGGATCAGCGAAGCCTTATGGGTCGTCTCGCAGTATCGTTAGATGGATCGGCTCGACCCTCCCTCTGGCGCCATGCCCTCGGGTCCACTTTCagCTCCAGACATTCGCTATCGGAGCTGGAGCAGGAGCTGGAGCAGGAGGCGCGGGCGGTCCAGGAGGACATGGCGGGCTCGTAGCATCGCTAGCTGACGTAGGGTGGATCGAGCAAGAGGAGAGCGATGATGTCTCTGACAGACGGCGGTTGGAGGCAAACTCTGGGCTGGTGTTTCGCACTCAGCAGTGCCCACCGCTCAGACGCCAGCACTCtttacccagcatgcaccagGCCGTGCCCGCTCCTCAGAGCCAGACACTCGTCAACGAGCAGGCCATTCAGAAGATCAGCGCTTTGGAGAACGAGCTGGCTAAGCTGCGAGCCCAGATCGCTCAGATCGTACAGGCTCAGGAGCGGAACGCACAGTCTGCAGCTCCTGCTCCAGGTGGTCCTTCTCCTCCACCCTCAGCACCTCCTCTTGcgcctcctcctccaccaccaccaccaccaccacctcctccacctccacctccaggCCCAGGCATGCAGAGGAGCGTTTCTGCTATTGACCTCATCAAAGAGCGGCGCAGTAAAAAGTCTGAGCAGCACACGGTGTTGGAGTCAGGGCCTAAACAGCCCGAGATGCCTAACATGTTAGACGTGTTGAAAGACATGGGCAAAGTGAAGTTACGCTCCGTTAAAAGTGCTCGTCTTGAGGAAGATCACACCAAGACTAAAGCCAGTGAACCCGCAGACCCCGCTGCTCTTATCGCTGAGGCTCTGAAGCGCAAGTTCGCCCATCGCTACCGCAATGACAGCGAGTGTGAGAGCAACTTCAGTCTCCCTGCTCGAGAATCCAAACCACGCTCAGAGACGCCTGCGTTCGGACAGCACATGTTGAAATCAACAGGAATGAGAAAACACGTGTGACGGCGGATCTGTGAGCTGCAAATCACGTGTGTACACACAGGAACAGACACTAAGCGCTCAGTCTGGTTTTCTGCACCAGCAGCATTGCAGATCACCGTAATCACAGAGTGTTGCACAATGCAACAGGAACCTGCTCGTTTTTATGCCTCGTTTATGCAAAGGACCAAAAAGCACGTTCACGTTCACGTCATGTCAGAATTACAGGAATGTAAAGATGACAACTCTTCTCAAATATGCACAATATCGAAAACCAATACatattttttgaaatattttcatttttcactaattagtaaaaaaaaaaaacactaaaaagctGAATT
>XR_004576959.1
GCTCTTGGGTGACGTCTCTTTGAGAAACAGTTTTTCGTTAGCAACAAACGGTGTTGTTGAGTTAACGAACtggaaaaaaacagctgttcGGCGCAGATGGAGGTAAACCGGGTGTAGCAGATTGACTCCGGGTCAGTTTGAAGATTAGATAAGTTTgtgACCGAGGTGAGGCACTCAGCATGGCAGAACATCACAGAGCAGTTTTAAGCGACTCGGTGTGACGATGAGAAGGAACGATGCGAGGATAGAGATGGACCTGGCTTTTGGATCAGCGAAGCCTTATGGGTCGTCTCGCAGTATCGTTAGATGGATCGGCTCGACCCTCCCTCTGGCGCCATGCCCTCGGGTCCACTTTCagCTCCAGACATTCGCTATCGGAGCTGGAGCAGGAGCTGGAGCAGGAGGCGCGGGCGGTCCAGGAGGACATGGCGGGCTCGTAGCATCGCTAGCTGACGTAGGGTGGATCGAGCAAGAGGAGAGCGATGATGTCTCTGACAGACGGCGGTTGGAGGCAAACTCTGGGCTGGTGTTTCGCACTCAGCAGTGCCCACCGCTCAGACGCCAGCACTCtttacccagcatgcaccagGCCGTGCCCGCTCCTCAGAGCCAGACACTCGTCAACGAGCAGGCCATTCAGAAGATCAGCGCTTTGGAGAACGAGCTGGCTAAGCTGCGAGCCCAGATCGCTCAGATCGTACAGGCTCAGGAGCGGAACGCACAGTCTGCAGCTCCTGCTCCAGGTGGTCCTTCTCCTCCACCCTCAGCACCTCCTCTTGcgcctcctcctccaccaccaccaccaccaccacctcctccacctccacctccaggCCCAGGCATGCAGAGGAGCGTTTCTGCTATTGACCTCATCAAAGAGCGGCGCAGTAAAAAGTCTGAGCAGCACACGGTGTTGGAGTCAGGGCCTAAACAGCCCGAGATGCCTAACATGTTAGACGTGTTGAAAGACATGGGCAAAGTGAAGTTACGCTCCGTTAAAATCGTCTTGAGGAAGATCACACCAAGACTAAAGCCAGTGAACCCGCAGACCCCGCTGCTCTTATCGCTGAGGCTCTGAAGCGCAAGTTCGCCCATCGCTACCGCAATGACAGCGAGTGTGAGAGCAACTTCAGTCTCCCTGCTCGAGAATCCAAACCACGCTCAGAGACGCCTGCGTTCGGACAGCACATGTTGAAATCAACAGGAATGAGAAAACACGTGTGACGGCGGATCTGTGAGCTGCAAATCACGTGTGTACACACAGGAACAGACACTAAGCGCTCAGTCTGGTTTTCTGCACCAGCAGCATTGCAGATCACCGTAATCACAGAGTGTTGCACAATGCAACAGGAACCTGCTCGTTTTTATGCCTCGTTTATGCAAAGGACCAAAAAGCACGTTCACGTTCACGTCATGTCAGAATTACAGGAATGTAAAGATGACAACTCTTCTCAAATATGCACAATATCGAAAACCAATACatattttttgaaatattttcatttttcactaattagtaaaaaaaaaaaacactaaaaagctGAATT
>XR_004576960.1
ATGAGTGTAATAGGGAGGCGTTTGGGATCGAGTCAGAGTGAGTTGGATTGTGAAAGAAGGAGAAATGTGTCAGTGAGGGGATTTTGGCCTCAGGCAGCTGCTGGAGataataaaagttaaaatagtccatttttagttttataaacATCACACTGAGCAAATGTGTAGGAAGTTAAAGTGAGACGGAGCTAACTGCTAATAGTTTGgtgACCGAGGTGAGGCACTCAGCATGGCAGAACATCACAGAGCAGTTTTAAGCGACTCGGTGTGACGATGAGAAGGAACGATGCGAGGATAGAGATGGACCTGGCTTTTGGATCAGCGAAGCCTTATGGGTCGTCTCGCAGTATCGTTAGATGGATCGGCTCGACCCTCCCTCTGGCGCCATGCCCTCGGGTCCACTTTCagCTCCAGACATTCGCTATCGGAGCTGGAGCAGGAGCTGGAGCAGGAGGCGCGGGCGGTCCAGGAGGACATGGCGGGCTCGTAGCATCGCTAGCTGACGTAGGGTGGATCGAGCAAGAGGAGAGCGATGATGTCTCTGACAGACGGCGGTTGGAGGCAAACTCTGGGCTGGTGTTTCGCACTCAGCAGTGCCCACCGCTCAGACGCCAGCACTCtttacccagcatgcaccagGCCGTGCCCGCTCCTCAGAGCCAGACACTCGTCAACGAGCAGGCCATTCAGAAGATCAGCGCTTTGGAGAACGAGCTGGCTAAGCTGCGAGCCCAGATCGCTCAGATCGTACAGGCTCAGGAGCGGAACGCACAGTCTGCAGCTCCTGCTCCAGGTGGTCCTTCTCCTCCACCCTCAGCACCTCCTCTTGcgcctcctcctccaccaccaccaccaccaccacctcctccacctccacctccaggCCCAGGCATGCAGAGGAGCGTTTCTGCTATTGACCTCATCAAAGAGCGGCGCAGTAAAAAGTCTGAGCAGCACACGGTGTTGGAGTCAGGGCCTAAACAGCCCGAGATGCCTAACATGTTAGACGTGTTGAAAGACATGGGCAAAGTGAAGTTACGCTCCGTTAAAATCGTCTTGAGGAAGATCACACCAAGACTAAAGCCAGTGAACCCGCAGACCCCGCTGCTCTTATCGCTGAGGCTCTGAAGCGCAAGTTCGCCCATCGCTACCGCAATGACAGCGAGTGTGAGAGCAACTTCAGTCTCCCTGCTCGAGAATCCAAACCACGCTCAGAGACGCCTGCGTTCGGACAGCACATGTTGAAATCAACAGGAATGAGAAAACACGTGTGACGGCGGATCTGTGAGCTGCAAATCACGTGTGTACACACAGGAACAGACACTAAGCGCTCAGTCTGGTTTTCTGCACCAGCAGCATTGCAGATCACCGTAATCACAGAGTGTTGCACAATGCAACAGGAACCTGCTCGTTTTTATGCCTCGTTTATGCAAAGGACCAAAAAGCACGTTCACGTTCACGTCATGTCAGAATTACAGGAATGTAAAGATGACAACTCTTCTCAAATATGCACAATATCGAAAACCAATACatattttttgaaatattttcatttttcactaattagtaaaaaaaaaaaacactaaaaagctGAATT
>XR_004576961.1
ATTGGCTCTTGGGTGACGTCTCTTTGAGAAACAGTTTTTCGTTAGCAACAAACGGTGTTGTTGAGTTAACGAACtggaaaaaaacagctgttcGGCGCAGATGGAGGTAAACCGGGTGTAGCAGATTGACTCCGGgtgACCGAGGTGAGGCACTCAGCATGGCAGAACATCACAGAGCAGTTTTAAGCGACTCGGTGTGACGATGAGAAGGAACGATGCGAGGATAGAGATGGACCTGGCTTTTGGATCAGCGAAGCCTTATGGGTCGTCTCGCAGTATCGTTAGATGGATCGGCTCGACCCTCCCTCTGGCGCCATGCCCTCGGGTCCACTTTCagCTCCAGACATTCGCTATCGGAGCTGGAGCAGGAGCTGGAGCAGGAGGCGCGGGCGGTCCAGGAGGACATGGCGGGCTCGTAGCATCGCTAGCTGACGTAGGGTGGATCGAGCAAGAGGAGAGCGATGATGTCTCTGACAGACGGCGGTTGGAGGCAAACTCTGGGCTGGTGTTTCGCACTCAGCAGTGCCCACCGCTCAGACGCCAGCACTCtttacccagcatgcaccagGCCGTGCCCGCTCCTCAGAGCCAGACACTCGTCAACGAGCAGGCCATTCAGAAGATCAGCGCTTTGGAGAACGAGCTGGCTAAGCTGCGAGCCCAGATCGCTCAGATCGTACAGGCTCAGGAGCGGAACGCACAGTCTGCAGCTCCTGCTCCAGGTGGTCCTTCTCCTCCACCCTCAGCACCTCCTCTTGcgcctcctcctccaccaccaccaccaccaccacctcctccacctccacctccaggCCCAGGCATGCAGAGGAGCGTTTCTGCTATTGACCTCATCAAAGAGCGGCGCAGTAAAAAGTCTGAGCAGCACACGGTGTTGGAGTCAGGGCCTAAACAGCCCGAGATGCCTAACATGTTAGACGTGTTGAAAGACATGGGCAAAGTGAAGTTACGCTCCGTTAAAATCGTCTTGAGGAAGATCACACCAAGACTAAAGCCAGTGAACCCGCAGACCCCGCTGCTCTTATCGCTGAGGCTCTGAAGCGCAAGTTCGCCCATCGCTACCGCAATGACAGCGAGTGTGAGAGCAACTTCAGTCTCCCTGCTCGAGAATCCAAACCACGCTCAGAGACGCCTGCGTTCGGACAGCACATGTTGAAATCAACAGGAATGAGAAAACACGTGTGACGGCGGATCTGTGAGCTGCAAATCACGTGTGTACACACAGGAACAGACACTAAGCGCTCAGTCTGGTTTTCTGCACCAGCAGCATTGCAGATCACCGTAATCACAGAGTGTTGCACAATGCAACAGGAACCTGCTCGTTTTTATGCCTCGTTTATGCAAAGGACCAAAAAGCACGTTCACGTTCACGTCATGTCAGAATTACAGGAATGTAAAGATGACAACTCTTCTCAAATATGCACAATATCGAAAACCAATACatattttttgaaatattttcatttttcactaattagtaaaaaaaaaaaacactaaaaagctGAATT
>XR_004576962.1
TGGCTCTTGGGTGACGTCTCTTTGAGAAACAGTTTTTCGTTAGCAACAAACGGTGTTGTTGAGTTAACGAACtggaaaaaaacagctgttcGGCGCAGATGGAGgtgACCGAGGTGAGGCACTCAGCATGGCAGAACATCACAGAGCAGTTTTAAGCGACTCGGTGTGACGATGAGAAGGAACGATGCGAGGATAGAGATGGACCTGGCTTTTGGATCAGCGAAGCCTTATGGGTCGTCTCGCAGTATCGTTAGATGGATCGGCTCGACCCTCCCTCTGGCGCCATGCCCTCGGGTCCACTTTCagCTCCAGACATTCGCTATCGGAGCTGGAGCAGGAGCTGGAGCAGGAGGCGCGGGCGGTCCAGGAGGACATGGCGGGCTCGTAGCATCGCTAGCTGACGTAGGGTGGATCGAGCAAGAGGAGAGCGATGATGTCTCTGACAGACGGCGGTTGGAGGCAAACTCTGGGCTGGTGTTTCGCACTCAGCAGTGCCCACCGCTCAGACGCCAGCACTCtttacccagcatgcaccagGCCGTGCCCGCTCCTCAGAGCCAGACACTCGTCAACGAGCAGGCCATTCAGAAGATCAGCGCTTTGGAGAACGAGCTGGCTAAGCTGCGAGCCCAGATCGCTCAGATCGTACAGGCTCAGGAGCGGAACGCACAGTCTGCAGCTCCTGCTCCAGGTGGTCCTTCTCCTCCACCCTCAGCACCTCCTCTTGcgcctcctcctccaccaccaccaccaccaccacctcctccacctccacctccaggCCCAGGCATGCAGAGGAGCGTTTCTGCTATTGACCTCATCAAAGAGCGGCGCAGTAAAAAGTCTGAGCAGCACACGGTGTTGGAGTCAGGGCCTAAACAGCCCGAGATGCCTAACATGTTAGACGTGTTGAAAGACATGGGCAAAGTGAAGTTACGCTCCGTTAAAATCGTCTTGAGGAAGATCACACCAAGACTAAAGCCAGTGAACCCGCAGACCCCGCTGCTCTTATCGCTGAGGCTCTGAAGCGCAAGTTCGCCCATCGCTACCGCAATGACAGCGAGTGTGAGAGCAACTTCAGTCTCCCTGCTCGAGAATCCAAACCACGCTCAGAGACGCCTGCGTTCGGACAGCACATGTTGAAATCAACAGGAATGAGAAAACACGTGTGACGGCGGATCTGTGAGCTGCAAATCACGTGTGTACACACAGGAACAGACACTAAGCGCTCAGTCTGGTTTTCTGCACCAGCAGCATTGCAGATCACCGTAATCACAGAGTGTTGCACAATGCAACAGGAACCTGCTCGTTTTTATGCCTCGTTTATGCAAAGGACCAAAAAGCACGTTCACGTTCACGTCATGTCAGAATTACAGGAATGTAAAGATGACAACTCTTCTCAAATATGCACAATATCGAAAACCAATACatattttttgaaatattttcatttttcactaattagtaaaaaaaaaaaacactaaaaagctGAATT

Function

symbol description
mtfr1 Predicted to be involved in aerobic respiration and mitochondrial fission. Predicted to be active in mitochondrion. Is expressed in adaxial cell; somite; and ventral mesoderm. Orthologous to human MTFR1 (mitochondrial fission regulator 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0009060 aerobic respiration biological_process
GO:0000266 mitochondrial fission biological_process
GO:0005739 mitochondrion cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298031.1 False 1557 mRNA 0.52 8 18315354 18323295
XR_004576959.1 False 1547 misc_RNA 0.52 8 18315360 18323295
XR_004576960.1 True 1597 misc_RNA 0.51 8 18315683 18323295
XR_004576961.1 False 1526 misc_RNA 0.52 8 18315356 18323295
XR_004576962.1 False 1495 misc_RNA 0.53 8 18315358 18323295

Neighbor

gene id symbol gene type direction distance location
bhlhe22 bhlhe22 coding upstream 98148 18214863 ~ 18217206 (+)
ythdf3 ythdf3,LOC107666630,LOC107705256 coding upstream 217439 18087647 ~ 18097915 (+)
lipib LOC108256469,LOC108438884,LOC107721863,LOC107705251,LOC107590204 coding upstream 331934 17973204 ~ 17983420 (+)
zgc:112408 zgc:112408,LOC108256202,LOC108438348,LOC107721840 coding upstream 351883 17960988 ~ 17963471 (+)
chodl chodl coding upstream 363728 17942428 ~ 17951626 (+)
dnajc5b dnajc5b,LOC107586796,LOC107663636,LOC107656153,LOC107721861 coding downstream 49427 18372722 ~ 18378196 (+)
trnaa-agc_15 NA coding downstream 56007 18379302 ~ 18379374 (+)
trnaa-agc_16 NA coding downstream 56647 18379942 ~ 18380014 (+)
trim55b trim55,LOC107590338,LOC107663638 coding downstream 56996 18380291 ~ 18390865 (+)
si:dkey-97a13.12 NA coding downstream 72932 18396227 ~ 18432150 (+)
G334077 NA non-coding upstream 111674 18203063 ~ 18203680 (+)
G334078 NA non-coding upstream 112449 18200395 ~ 18202905 (+)
G334032 NA non-coding upstream 206550 18085319 ~ 18108804 (+)
G334028 NA non-coding upstream 235984 18079151 ~ 18079370 (+)
G334005 NA non-coding upstream 270177 18043824 ~ 18045177 (+)
G334209 NA non-coding downstream 112426 18435721 ~ 18437406 (+)
G334210 NA non-coding downstream 115854 18439149 ~ 18439446 (+)
G334211 mybl1 non-coding downstream 116960 18440255 ~ 18440656 (+)
G334219 NA non-coding downstream 177488 18500783 ~ 18530907 (+)
LOC113541128 NA non-coding downstream 220067 18543362 ~ 18681823 (+)
G333943 LOC108256468 other upstream 322340 17986762 ~ 17993014 (+)
pan3 pan3,LOC107705213 other upstream 518833 17761531 ~ 17796521 (+)
rnf6 rnf6,LOC106590444 other upstream 772967 17535944 ~ 17542387 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other upstream 1013350 17285082 ~ 17302004 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other upstream 1205327 17100164 ~ 17110027 (+)
mcmdc2 mcmdc2 other downstream 144583 18467878 ~ 18486009 (+)
G334373 NA other downstream 369854 18693149 ~ 18717953 (+)
LOC117595806 zfhx4,LOC107590192 other downstream 388753 18712048 ~ 18747477 (+)
dap dap,LOC107705232,LOC107701690,LOC107654217 other downstream 994562 19317857 ~ 19427936 (+)
G334838 NA other downstream 1252816 19576111 ~ 19577073 (+)

Expression


Co-expression Network