LOC117595784 (LOC108256266,LOC108256164)


Basic Information

Item Value
gene id LOC117595784
gene name LOC108256266,LOC108256164
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1138279 ~ 1166958 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298040.1
TGAAGAAGAGATGAAGATGCTGCACTTGGCTACAATTCTGCTCACGCTGTCCGGTGTTCTCACTCAGAGCAGTGATTGGGATGTGAAATATCCTGATAAGCCGATCTGTGCTGTGAGAGGATTCAGTGTCTCCATTCCCTGTAGTTATTATTATCCAACATCAAATCCCAAGATTCAGGTGACACAAATGCTTTGGTGCtcaatgaacacaaacacaggaaggtGTTTGGATCCACTGTATGTTTATGACagctcatcaaacaccaactcaGACTTTGAGTACGCTGGAGACGACAAATCAAACTGCACTTTGTTAATCCACAATCTACAGTTCAGTTATTCTGGAGAGTACAAATTCAGATTTATAACTGTTCAGCCTAGTGACAGATACACAGGTCATCCTGGAGTGATTTTACAAGTTGCAGATTTAAAGGTGTCACTAATCAGGCTCAGTGGAAACGGAACCCTTAAACAAGGAGACTCGTTAAATCTGACGTGTGATGTGAACTGCACACACAGTTCCTCACAGTTTGTGTGGTCTAAGAACAACGAGCAGTTAAACACATCAGGACCCGTTCTTCACTTTCCTGCTCTAACCATGAGGGATTCTGGGAGTTACACCTGCACTTGGAAAACCAATGAGGCGTCAGGATCTGAAACGATCAGCCTTCAGGTCGAGGGTGAAAATCCTGATCATTGGTCAATCTGGATCATTGTTTTAGTGACAGCTGGAGTGATTTTCATCTTCTTAGCTGTTCCAGCTGTGATTTACAACAGGAGGAGGAAATTTAAAGCTCCAGAAAAAAACGGGAGGGAAAGTGGAGAGAAAACACAGACAAAGCCACAGTTAAACCAAGTTTCTCAAGTTCCTGATGAAGAAATGATGAACAAGGAGGAAGTGACTTACTCGTCTGTCCAAAACAAAGCAACAACAAAAGgTTCACAGGTCACAGTGCAGCTAAATCAAGTTCCTGAGCCTGATGAAGAAGTGTTAGATAAAGGAGGAGTGATTTATGCATCCGTGTGCATCAAACCCAACAAACCAACCGAAcgGCGAGTCCACACtgagcagcaggagcaggacgATTCTGTAATCTACAGCGCTGTGAAAAAGGCCTGATGACGCTTTCACACCTCATTCACCCACAGTGCAGATGAGTTTTATTTAGTAATCATCATAATGCCTGTGGTTTCTCCATGCATGTAACTCTGTAGGATTTAAGACTTGCTAATGTCATAGGAAGTGTCAGTTTATTTGCTGTAAACATCTTGTTTGGAAGgagatttaaaatgaatttgtttaacacattcTTGTGATTTCTTTATTGTAATTCATGTTGTTTTTGAGTAAACAGCTTCTTTTACTTCTTAGGGTGCTTTAAGCCCTATTCAGACAGGTTTAGTTTTACATGTGGAGATGGATTTAATTTCTCAGGGATTTTAGTTCCACCTGAATCCGTCACGTCAGAAATTGTTTACATACATGCAAATGAACGTGTCTGGAAAGGTTACgctgtattttaaaaaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298040.1 True 1529 mRNA 0.41 8 1138279 1166958

Neighbor

gene id symbol gene type direction distance location
LOC113525078 LOC108256274,LOC108256268,LOC108256164 coding upstream 14098 1103739 ~ 1124181 (+)
cmtm6 NA coding upstream 182886 934154 ~ 955393 (+)
cmtm7 cmtm7,cklf7,LOC106606093 coding upstream 207414 923165 ~ 930865 (+)
LOC117595801 NA coding upstream 224029 908628 ~ 914250 (+)
rpp25l LOC108256289 coding upstream 231575 904463 ~ 906704 (+)
LOC113541446 LOC108256266 coding downstream 18562 1185520 ~ 1187361 (+)
ptpn23a ptpn23,ptpn23a coding downstream 129918 1296876 ~ 1310714 (+)
si:ch211-269k10.4 NA coding downstream 314941 1481899 ~ 1484529 (+)
LOC113532957 LOC108256297 coding downstream 541474 1708432 ~ 1713392 (+)
dnase2 LOC108256294 coding downstream 557173 1724131 ~ 1734131 (+)
G324216 NA non-coding upstream 384836 749451 ~ 753443 (+)
G324197 NA non-coding upstream 424478 713395 ~ 713801 (+)
G324160 NA non-coding upstream 530736 607045 ~ 607543 (+)
G324156 alkbh8 non-coding upstream 539109 598410 ~ 599170 (+)
G324125 NA non-coding upstream 549370 585179 ~ 588909 (+)
G324284 scap,LOC102785784,LOC107600505 non-coding downstream 143953 1310911 ~ 1315115 (+)
G324294 scap,LOC107666822,LOC107600505,LOC107713836 non-coding downstream 162689 1329647 ~ 1330871 (+)
G324303 NA non-coding downstream 172570 1339528 ~ 1368639 (+)
G324305 NA non-coding downstream 174167 1341125 ~ 1342780 (+)
G324328 NA non-coding downstream 211588 1378546 ~ 1378940 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other upstream 128056 956584 ~ 1010223 (+)
psmc4 psmc4,LOC107719110 other upstream 331751 774289 ~ 806528 (+)
G324206 NA other upstream 389804 745673 ~ 748475 (+)
G324123 NA other upstream 503234 567202 ~ 635045 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other downstream 732668 1899626 ~ 1919710 (+)
bola1 bola1,LOC107592543 other downstream 975234 2142192 ~ 2144525 (+)
LOC113533074 LOC108256184 other downstream 1037888 2204846 ~ 2215410 (+)
G325435 NA other downstream 1398742 2565700 ~ 2569739 (+)
hamp NA other downstream 2844422 4011380 ~ 4013538 (+)

Expression


Co-expression Network