crot (crot,LOC107738865,LOC107689876,LOC107549228,LOC107597963,LOC107681585,LOC107717792)


Basic Information

Item Value
gene id crot
gene name crot,LOC107738865,LOC107689876,LOC107549228,LOC107597963,LOC107681585,LOC107717792
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5317198 ~ 5331214 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298071.1
TGAGCTGTTTACAGGCTACTGGGTGAAAGGTCGCGGGATCAGAACCCGGTTCGGAGTCAGATCACATAAAGATGCAGTAACACTGCACTGCGTCTATCCTGTAATAACAACACTAACATCTGGACTTCATCACCAGCTGTTTGCTTCTTGCTTCTTGATTATATGGTGTCTTTTCTCCTTGCAGATCGTTACATCTTACTTTGAGGTATAATAATGGATAATCAGGCATTTGAATCTGTGGCCGAGCGAACTTTCCAGTATCAGTCCACGCTGCCACCGCTGCCCGTGCCGTCCCTGGAGGAAAGTCTCCACAAATACCTGGACGCAGtgAAGCCATTTGCCTCTGAGCATGAGTTTCGCAACACAGCAGCCATCGTGAAGCGCTTTGCTGAGGGAATCGGGCAGCATCTTCACCAACGACTCCTACAGCGAGCCAAGAGCAGGCGCAACTGGCTGGAAGAATGGTGGTTGGACACGGCGTATTTGGAAGTTCGAATCCCGTCTCAGCTCTATGTGAACTTCGGAGGACCAGGGCCGTACCTGGAGCACTGCTGGCCGGCGTGTGAGGGGACGCAGTTGGAGAGGACCAGTCTGGCGACGTGGCTCACGCTTCAGTACTGGGACCTCATCCGCACGGAGAAGTTGGCCGTCCATAAAGCAGGAAACATGGCCTTTGACATGGATCAGTTCCGCATGCTCTTCTGTACCTGCAAAGTACCTGGAATTAACAAGGACAGCATTGTCAACTACTTcaagacagAAAGCGAAGGCCCGTGTCCTTCTCACCTCATAGTGATGTGTCGTGGCAGAATCTTCACTTTCGATGCTCTCTGTGATGGACGCATCCTCACTCCTCCTGAATTACTGagGCAGCTGACCTACATTAAACAGAGCTGTGATGGAGAGGTCTGGGGTGATGGAGTGGCCGCTTTGACCAGTGAAGAGAGGACGAAATGGGCTAAGGCACGGGAGCATCTGATCTCAATCGATCCTGTCAATAAGAACATACTGGAGACCATCCAAAGCTCGTTGTTTGTTCTCACACTGGACGATGCAAAGCCATATTCCACCCCGGAGAATTACACCTCgatgACCCTGTTGGCTCTGACAGGAGACCCCACTGTCCGCTGGGGTGATAAATCCTACAACTTCATCAGCTTTGCCGACGGCACCTTCGCCTCAAACTGTGATCACGCACCCTATGATGCCATGGTCTTGGTGTCAATGTGTTACTACATGGACCAAAAAGTGAAGGCCGTCAGTGGAAAATGGAAGGGTACAGAAGTGGTACGAGACCTTCCTGATCCAGAAGAGCTTGTGTTCACTGTAGATGAAAAAGTCAGGAGAGACATTACACTGGCAAAAGAGCAGTACAGCAAAAGTACTCAGGATCTGCAGGTCATCTGCTATGCCTTCACCTCTTTTGGGAAAGCAGCGATCAAGAAGAAGAATCTTCACCCGGACACATTCGTTCAGCTGGCCATGCAGTTAGCGTACTACAGGCAACATGGAAAACCTGGGAGTTGTTATGAGACCGCCACCACACGCCGTTTCTATCATGGCCGCACAGAGACTATGAGGCCGTGCACAGTCGAAGCCCTACACTGGTGCAAAGTCATGCTGAATCCCTCGGCAACTACTGAAGAGAAAAGACAAGCGCTGCTTCGTGCtttcaacaaacacaacaaactgaTGGATGAGGCTCAGAAAGGAAAAGGCTTTGACCGGCATCTTTTGGGCCTGTACCTGATCGCCAAGGAGGAGGGACTTCCAGTTCCTGAGCTTTACTCAGACCCTCTCTACTCTAAGAGCGGCGGAGGAGGGAATTTCATCCTTTCCTCCAGCCTTGTTGGCTACACGACTGTTCTGGGGGCCGTCTCTCCCATGGTGCACCACGGCTATGGCTTTTTCTACCGCATCCGTGACGATAGGATTGTTGCTTCCTGTACAGCCTGGAAATCCTGCCCGGAGACAGACGCTGAGACGTTCTTTCAGAACTTGTGCACCTCCTTCCATGATATCATGCGGGTCACGACCCTGTCTCACCTGTAGAGTAAAGCtgtctgggaaatggagtccttTTAGTACGGTTTCAACTTCATGTAGACAAGCTAGCAGTGATCAAAGTGCCTTTAATTGTATTAAACCTCAGGCTTTCACGCAATACAATACGATTTAGAGTAAATGAGACGATATCTGAATCTGCTACCATATGATATGATTCAATTTAGCAGCCTTTGATcaaactttgttcagaatctgttGTAGGCCTACTGTTAATTCGTGAAtgataattacataaaatagGACTATTTTGAAAGTATCGTAGTTATGGGAAAGTCATCTAGATAGACAATTAAATTGTTTAcgcatcagtttaaaaatatgaattatttttacacagcAGTTGTTTGTCCTTCAATAATAATCGATTGTGATTGTTGTATCAATTAATTTCGATCATTGCTTTTTAATTCAACGCATCAATCCAAAACATCAGATAGTTTCACCCCTAGTAATCAacgaagaataaaaaaaaaattaacagaatATTCGTGACAGGTTTTGTTTGACCAAAGGCACTTGTAATAATCTTTCATATTGTTGCCTTTAGGTGTTTTACACCTCACCGCTTGCTGTTGAAGAAAAAACTGCGATGAGCACTATGTGCAAGTCTCATAAACTAAGGTATTATTCAGATTTTGTTTagtctttcattaaaaaattctaTCTTTTAAATTAGGAATTTTTGTTTAGCATTGCGTTGGTACTCTTTAATAAATCTCTGCATATGTTACAGGTCAAGAAGATGTAATATGTAGAGCTTTAAATGGAACAGTTTAAGTGCTCTTACTGTAGTTTACCAACATAAATGAGAGAGTAATGTAGAGAGGATTTAGTACATCAGTGGAATTGcttaaataaaaagctgtatTGAGTAAAAGCAATTAGTTCTGCGTTGAAATGAATTCTGAATCACTGTAAATTCAGTTGATGGCAACGTCACTTACCGTTGTTAGGATTTACAACATAAATGTAGTTGATCGGTCTTCGACCTTAATTAGGGCTATACAAGTTTTccaacttgaaaaaaaaaaaaaaaaaaaaaaaacagaagatggACGAGACAgctaaaaatttttttagacAATAAGAAAATAGGGAGGCAAAAGTCCAATGTGAACACTACTTAATAATCCCCTTTATTCTATAGACCACAGAGCCCACAGTCCCTCCCATTTGGTTTCTGTTGGCTCACActactgaagctcttgatttCACAGCAATAAattcagcacaaaatgaaattaacTGCTACCATGAGCACACGCCTGTTTCACGTCCTGTATCTTTTCCCCTTTAGTGAAAAAATCAGAACTGCTTCGGTTAAAGTGTAAATATTGCCCTGTCTGGATTTGGTGGTTAATTATCTAATGTGTTCATGTAAAcagtgctgtctctctctgtgtatgtgaaaTGCGCAAAGAACCAGATGGTTCAGTTCATTACCTGGTATTACCTTATGGATTTAAACTTTATCCAAAGCTGCTTTAGAGAAAGTGATGAGGATTACACAGAAAATGCAACACAACATTGATATATATTGAATGTATAGAAAACATGATAAACCCCCATGCAAAGATCAATGCAAGTGAACAGAAACAATGCAACCATTcttacttcatttcatttctgtaattaGTTTTCTGTTATATactgttttgctcattttaattttaatctcaAGTGAaatgttcttctttcttctgtGCTATATCACTGTATTTTGAGTATCAATCAAGAGtaaattctttatattttgtta

Function

symbol description
crot Predicted to enable carnitine O-octanoyltransferase activity. Predicted to be active in peroxisome. Orthologous to human CROT (carnitine O-octanoyltransferase).

NR:

description
PREDICTED: acyl-CoA-binding domain-containing protein 7 isoform X2

GO:

id name namespace
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG:

id description
K05940 CROT; carnitine O-octanoyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298071.1 True 3826 mRNA 0.43 17 5317198 5331214

Neighbor

gene id symbol gene type direction distance location
nmt2 nmt2,LOC107738873,LOC107681575 coding upstream 10059 5298302 ~ 5307139 (+)
fam171a1 fam171a1 coding upstream 22455 5260438 ~ 5294743 (+)
LOC113532775 LOC108256159 coding upstream 58639 5254686 ~ 5258559 (+)
LOC113532776 LOC108256651 coding upstream 62646 5248910 ~ 5254552 (+)
LOC113532629 LOC108256652,LOC108256651 coding upstream 69054 5241135 ~ 5248144 (+)
rundc3b rundc3b,LOC107666772 coding downstream 24968 5356182 ~ 5386626 (+)
dbf4 dbf4 coding downstream 69719 5400933 ~ 5411050 (+)
adam22 adam22,LOC107719137,LOC107714333 coding downstream 84718 5415932 ~ 5492739 (+)
mrpl32 mrpl32 coding downstream 215337 5546551 ~ 5547833 (+)
ccdc127a ccdc127 coding downstream 219011 5550225 ~ 5553304 (+)
G326462 LOC108256729,LOC108426375 non-coding upstream 287408 5019782 ~ 5029790 (+)
G326458 NA non-coding upstream 333518 4983473 ~ 4983680 (+)
G326440 NA non-coding upstream 392562 4924178 ~ 4924636 (+)
G326429 NA non-coding upstream 513139 4803837 ~ 4804059 (+)
LOC113532560 NA non-coding upstream 513687 4800572 ~ 4803511 (+)
G327071 NA non-coding downstream 210144 5541358 ~ 5541889 (+)
G327178 NA non-coding downstream 274656 5605870 ~ 5607099 (+)
G327385 zfpm2 non-coding downstream 501779 5832993 ~ 5833262 (+)
G327391 NA non-coding downstream 511005 5842219 ~ 5842438 (+)
G328024 NA non-coding downstream 1317066 6648280 ~ 6708779 (+)
acbd7 acbd7,LOC108256514 other upstream 2584 5311209 ~ 5314614 (+)
klf10 LOC108256604 other upstream 327882 4984415 ~ 4989316 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other upstream 387043 4924781 ~ 4930155 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other upstream 393517 4920980 ~ 4923681 (+)
LOC113532991 LOC108256125 other upstream 882947 4398659 ~ 4434251 (+)
G326997 NA other downstream 1054 5332268 ~ 5338251 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 other downstream 1892808 7224022 ~ 7247279 (+)
LOC113532663 NA other downstream 2570301 7901515 ~ 7902608 (+)
osr2 osr2,LOC106591507 other downstream 3041471 8372685 ~ 8378896 (+)
LOC113532774 vps13b other downstream 3056973 8388187 ~ 8550238 (+)

Expression


Co-expression Network