gpr12 (gpr12,LOC107701646,LOC107716385,LOC107654195,LOC107705188)


Basic Information

Item Value
gene id gpr12
gene name gpr12,LOC107701646,LOC107716385,LOC107654195,LOC107705188
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17496077 ~ 17503703 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298075.1
gcggcACCgaccgccgccgccgccgcggGGGACATGGACACGCAACAAGGTCGCGAGCGCGTCTGAATCGCGCGTCTCGACCTCCAAGATTACAAGACGGGAGGCACAATGAGCGAGCAGGTGTCAGTCACCCCGAGCTGGCTGACCCCTGACCCCAGCTGGGTCAGCAGCGGTGGTGGGAGCACCGAGAACCTGACAGCTGGAACGCCTCCTCCACCTGCCATTTTACCCCCGGAGTCTTCTGCCGAGCTGCTGGTGAATCCGTGGGATATTGTGCTGTGCACGTCGGGCACCCTGATAGCCTGCGAGAACGCCCTGGTGGTCCTGGTGATCTGGCAAAACCCGGCTCTGCGTGCTCCCATGTTCCTGCTGATTGGTAGCCTGGCGCTGGCTGACCTGCTAGCCGGTGTGGGTCTGGTGCTCCACTTCGCCTTTGCCTACCTGCTGCGCTCGGACGCGGCCCAGCTGCTCACGATCGGCCTGGTGGTGGCCTCGttctctgcctctgtcttcAGCTTGCTGGCCATCACCATCGATCGCTACCTGTCGCTGTATTACGCGCTCACGTACAACTCAGAGCGCACAGCTGCCTTCACCTACACCATGCTGGTGCTGCTGTGGGGGGCGTCCCTGTGCCTTGGTCTGCTGCCCGTCACGGGGGTAAACTGCCTGAGTCAGGAGGACGCCTGCAGCGTGGTACGGCCGCTCACAAAGAACAATGTTGCTGTTCTGTCCGTGTCCTTCTTGCTGCTCTTCGGGCTCATGCTGCAGCTCTATGTGCAAATCTGCAAGATTGTAATGCGGCATGCGCACCAGATCGCCGTGCAGCACCACTTCCTGGCTGCCACACCGCACTACGTCACGACACGCAAAGGCGTCTCCACGCTCGCCATCATCCTGGGAACGTTTGCCGCCTGCTGGATGCCTTTCACCGTCTACTCGCTTATTGCTGACTACACCTACCCACCGCTGTACACCTACGCCACGCTGGTTCCCGCCACCTACAACTCCATCATCAACCCCGTCATCTACGCCTTCCGCAACCAGGAGATCCAGAAGGCGCTTTGGATGGTGTGCTGCGGCTGCATCCCGGCCAGCATGGCACAGCGGGCACGGACGCCCAGCGACGTCTAACGTACATGTCTCCCTGGGATTGCATGCCGTTGTGAGACAAGGGGACATACGTGTGGCCCTTCTTTTACGTCTTCCCCTTATTGTGATGTAACTTCGACCACTGCCACAtggccttttttccccctcacccTGGTGCCACCAAACTGCCACCAAAGCCAACCTTTTCACGGCATTTATCTGTACATAAAATGTAGATAAACTTGCTGTTGTAAACAATGAGTGCTCCTTTGAAAGGCCTCAGCGGCATCCCTCAGTGAGGGAGGAGGCTGAGATGAGGGGCCTCGCTCTTCTCTGCTGCATTCTGAACGTGTGCTGAAAACCAAGCAGCCATGGGGAGCTAAAAATAGCCGCAGCGATCAGTGATCCACGCCTCGCGTCATCCGCTGGAGAGAAAAGCAGCGCCAATCTTGCTTTATCCTGCTTGCTATTTTTGTGCGGTTTTATTTTTTTCGTTTTGCTTTAAAGACCCTGACCCAAATGTGCCCAAATGTACAATGTCCTCCAAATCAGAAGACCATGAAGAGCTAACAAGAATCCCCTGAATAAAACCCGTTGATGCCTTTATTTCCATTTCTTGCCACAGGATGACTAGCATTGGTTTCCTCCTGCATAAAGAGCGGAGGCTGGAATGAACTGGGCTGGATGTGAAGTGCATGGATATTTAAGCAGTTGTGTATGAATGAATAGGGGGTTCACTTTGAATGAATGTACGCTTTAgtgacatttgtttaattcagtGATGTTGTCTCTGATTTAAAAAGTCCTTTGTTTTTGCCCTTCATACTTTACTTCCAGCTGAGCACCAGTCTAAATAATGGCCAAtaggaaaatgaacaaattcatttatattaattgGTAATTACTTGAAGTGTTTTAATTGAAATACAGGGCTACTtaacaaaatacagaaataaccTAATCACCTTTATCACCTGAATGTGAAGTATTCCCTGGAAAGCAAGCGGCTGATGAGGAAGATAATGAGAGCAAACACAGATGCTGCTTTATAgacaaaaaccaaacaaacaccaGGTTAGTTAGTTAGCACCGCTGCTCTCCTCTGACGCCATCGATTTTGATGATAAGGGAGGTTATGAGCTTGCGGAGTTTAGCTGATGGTGACTTTACAAGAAAGAGCTTGGCTAAGCCGCTGTTCCTCCAAGAAATAATGAAGGGGGGCAAATTGCACAAATTGTAGTTTTGTGTCTAAGTTCtgctttttttaagttttgcaATCAAGCTATAAGGCTCAGTATCCACAAAACCACTGAGGAACTTTTTCCTAAGAATGTATGGTTCCTGTTTTAATCTATCTCAATTTGAAAagtaatattaatgttatttaaacacttttaatcTGAAGCAATTATTGTTATAAAGGCAAACGGTTCTCCGCCCAAAAAGGATTCCTCAAAGGCGATTTGTATGGTTAATGCATTTAGATCTTTAAAAGGGTTCTAGCTGGAACGTTTTATGGAAGGGAAACTGGTGTAGGGTTTTACAGTATCTCCCAGAAGGACAAGCTGTAGAACCTGTTATGGTTTTAGATGAAACTTTTTGGTTTAATGGAAGCTTATGACCATGAATAGCATCATGTATATACCCTGTAAAAACTTGGAGAAGCCTAAAGAATCTTTGGCTTGTTCTTCTGGGGGAACAAAGAACCTACAACaaattttactatttaattatAGGCACACACTGTATCTGAACCTGACACCAAATCTGCCACTCTTAAGGGTTCTCTGAGTTTTCCTACTAGGGGAACCCTAAAacaaagaacctttaactatCCAATGAAACTTTGAGAAACTTTTTCAGTACAATTTTGTTATTTAGTTGCAGGCATATTGTCTAAACCTGATACTAAATCTATCACTCTTAAGTATTCTTTGATTTGTCCCTCTGGGAAAACTGAAAGGTTCCTTGGTCATGAGTTGAGGTCAGTGGTCTTAAGGCCAAAGAAAGCTGAAGAACAAAGTTCTGGcagaatttttttcattaaaatgtcagAGTGTGAGCTGCTATGATGCTCGTccaaaagccaccaataggaggacggcatgGGATGAGACCACAGATACCGTATATATGATGGCGACAGCTACAGATACGGTATATATGATGGCTAAACATTAACAAatcatgctaatggacagaaaaagcTTGTTTTTATGCAAGGCTGTTTTGTGCTCGAGCTAGGATCACGCTGATTGATGACATAAACAGAACGTAGTAATTTCCTTTAATCACAGGATCAGTTTATACAATGTGACAACTCATAATCTTAAAAGGTCGATAAAATCACTCAGTCTAAAACCAGCTGGATTCACTGACAGTCGTGGGTGTTTAGAGGACCTTAACCATCCCAGGAACCATTGAGGAACCGGTTTTAAGAGGGTAGAAACCACATTTGCATGGTGCTAATGTGCTAATGCATATGTTTTGCCttatagctccagtgcaaaaataGCAAAATTTGAATGCTAAACTGCAGTGTTTTGCCTGTTTGACtacatttgtagaaaaaaaaattgtgcatatttcagttttcttcccAGAATCACATTATATTAATGCTTTAAAACTCCTGCTCTCAAATCTGTTTCAGCACTAAGGTCAGACTCCATGAGCAAGCAATAACCACATCTGAGTGTTTCACCAAAATGACAGCAATATTCCAGCAGCAATAACAGCTTCGTCCAGCAAATCGGAAATATCACCATATGATAATATGCCACTCCAAATGTCCCTGAGTGGAAATAAAGCAAGACCACTGCGGGTGACTTTTATTGTAAAACCCAAAGCATTATGAACGAAGCTGTATTTCCAAAATGTGAACCGGACACAATGATCTGTCCGAACCTTTGGCGCTACGACAGCAGTCGAACTGCCTATAACAGAATCGGGTCCTCCCCCTCAGCGTAACACGTTCATGCAGTTTGCATCTGCCGTCGTGAATCTCTGACCTGTAACGTGTGTCATGTCTCTGTATGATCGCATTTGTTGCATGGCGGCGTGTAcgtgcatgtatgtgtatgtcttcgtgtgtgtgtcatgctaAAAAGCCTGTCTCCCTGAAGGCATGCAGAACGGACGGAGGTGAGGTGGCAAACGTCTCCTGTGCGAATTCCCCAAAGATGTGTACGGGGTCAAAAAA

Function

symbol description
gpr12 Predicted to enable G protein-coupled receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway and regulation of metabolic process. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human GPR12 (G protein-coupled receptor 12).

NR:

description
PREDICTED: G-protein coupled receptor 12

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04315 GPR12; G protein-coupled receptor 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298075.1 True 4294 mRNA 0.47 2 17496077 17503703

Neighbor

gene id symbol gene type direction distance location
usp12a usp12,usp12a,LOC107705210,LOC107584971,LOC107591222,LOC107654221 coding upstream 3759 17483693 ~ 17492318 (+)
lnx2a lnx2,lnx2a,LOC107716412,LOC107584972,LOC107701681,LOC107591221 coding upstream 29625 17450723 ~ 17466452 (+)
urad urad coding upstream 61252 17432046 ~ 17434825 (+)
ccdc191 ccdc191 coding upstream 105438 17378301 ~ 17390639 (+)
drd3 drd3 coding upstream 142768 17336192 ~ 17353309 (+)
atp8a2 atp8a2,LOC108438947,LOC107654223,LOC107716405,LOC107584968,LOC107732915 coding downstream 40120 17543823 ~ 17605193 (+)
spice1 spice1 coding downstream 118243 17621946 ~ 17629485 (+)
LOC113541191 cfap44 coding downstream 132680 17636383 ~ 17653613 (+)
boc boc coding downstream 175195 17678898 ~ 17706118 (+)
atp6v1ab atp6v1a,atp6v1ab,LOC107599937,LOC107687683,LOC107591235,LOC107716398,LOC107654231 coding downstream 224150 17727853 ~ 17739585 (+)
G333582 NA non-coding upstream 49034 17446185 ~ 17447043 (+)
G333548 NA non-coding upstream 133002 17362871 ~ 17363075 (+)
G333360 NA non-coding upstream 309402 17186129 ~ 17186675 (+)
G333244 map3k20,LOC108439325,LOC108256334,LOC102795565,LOC101475626 non-coding upstream 598222 16893006 ~ 16897855 (+)
LOC113541357 NA non-coding upstream 605916 16888906 ~ 16890161 (+)
G333787 NA non-coding downstream 163933 17667636 ~ 17667844 (+)
G333791 NA non-coding downstream 166713 17670416 ~ 17670625 (+)
G333779 usf3 non-coding downstream 204019 17707722 ~ 17712380 (+)
G333795 NA non-coding downstream 237698 17741401 ~ 17756282 (+)
G333797 NA non-coding downstream 252622 17756325 ~ 17756542 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other upstream 194073 17285082 ~ 17302004 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other upstream 386050 17100164 ~ 17110027 (+)
G332636 NA other upstream 1929414 15566175 ~ 15566663 (+)
stau2 stau2,LOC107691439 other upstream 2181109 15134353 ~ 15314968 (+)
rnf6 rnf6,LOC106590444 other downstream 32241 17535944 ~ 17542387 (+)
pan3 pan3,LOC107705213 other downstream 257828 17761531 ~ 17796521 (+)
G333943 LOC108256468 other downstream 483059 17986762 ~ 17993014 (+)
mtfr1 mtfr1 other downstream 811651 18315354 ~ 18323295 (+)
mcmdc2 mcmdc2 other downstream 964175 18467878 ~ 18486009 (+)

Expression


Co-expression Network