cdk8 (cdk8,LOC107732894,LOC107701677)


Basic Information

Item Value
gene id cdk8
gene name cdk8,LOC107732894,LOC107701677
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17521783 ~ 17535395 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298079.1
CATCACAAAGCCCTGTCCTGTCAATTAGCGGCTTTTACGACGCTTTGCGACAGTGCCGTATGCCGACGCGCAGCTCTCCCCAGTGAGATACCGGCTGGGAAGCGCAGTTGCAGGGAAAAATTAACGCAGTCGGATCGTAAACGCAATAACACCGAGTGATTTCTGCGGATGAAAACTCGTTAGTTTGTCATCTACAAATCGCAGGAGGTAAATGTGGGGATTTCAGTGGGATTAGCAGCGACGCGAGGAGGGAAGGCAACTCATTTGTGTGAGCAGGGCTCGGAGTAAAGTTGCCTCCCTGTTAGCGGCGCTTTAAAGGGAAGAAAGACAACAAAAGCGGTTGTGCACAAGCTGCGGTGAAAATGGACTATGATTTCAAAGTGAAACTGACCGGAGAGAGGGAACGTGTAGAGGACCTGTTCGAGTATGAGGGATGTAAAGTGGGCCGGGGGACGTACGGTCATGTGTACAAGGCGAAGAGAAAAGACGGGAAGGATGATAAAGAGTACGCTCTGAAGCAGATCGAGGGCACAGGGATCTCTATGTCTGCATGCAGAGAAATAGCGctgctaCGAGAGCTGAAGCACCCCAATGTGATCTCACTGCAGAAAGTTTTCCTGTCACATGCAGACCGCAAAGTGTGGCTTCTCTTTGACTACGCAGAGCATGACCTCTGGcacatCATTAAGTTCCACAGAGCCTCCAAGGCCAATAAGAAACCTCTGCAGCTGCCGCGCGGGATGGTGAAGTCTCTCCTCTACCAGATCCTGGATGGGATCCACTATCTGCACGCCAACTGGGTCCTTCACAGAGacctgAAACCTGCAAATATCTTAGTAATGGGCGAGGGGCCAGAGAGGGGCCGCGTCAAAATTGcggatATGGGCTTTGCCCGGCTCTTTAATTCACCACTGAAGCCTTTAGCCGATCTGGACCCTGTGGTGGTCACTTTTTGGTACAGAGCACCGGAGCTGCTGCTGGGGGCCAGACATTACACCAAAGCCATCGATATCTGGGCGATCGGCTGCATCTTTGCAGAGCTCTTGACCTCAGAGCCGATATTCCACTGTAGGCAGGAGGACATTAAGACCAGTAACCCGTACCACCACGACCAGCTGGATCGCATCTTCAACGTTATGGGCTTCCCTGCAGATAAAGACTGGGAGGACATTAAGAAGATGCCGGAACACTCCACACTGATGAAAGACTTCAGAAGGAACACATACACTAACTGCAGCCTTATAAAATACATGGAAAAGCATAAAGTCAAACCTGACAGTAAAGCATTCCACTTGCTCCAAAAGCTGCTCACTATGGACCCGATCCGCAGGATCACATCCGAACAGGCCATGCAGGACCCGTACTTCCTGGAGGAGCCTCTTCCCACCTCTGATGTCTTCGCCGGGTGCCAGATCCCGTACCCCAAGCGAGAGTTCCTGACTGAGGAGGAACCTGAGGACAAGGCAGATAAAAAGAACCAGCAGCAACAGGGGAACAACCACACCAACGGGGCGGGGCACACTGTTAACCCTGACAACAGCCACGCACAAGGCCCGCCTCTCAAAAAAGTGAGAGTGGTTCCGCCCACCACTACCTCAAGCGGCCTGATCATGACCTCAGACTACCAGCGTTCAAATCCACATGCTGCCTACCAGAACCCAGGACCAAGCACATCACTGCCCCAGAGCAGCATGGGATACTCCTCTACCTCCCAGCAGCCTCCACAGTACTCACACCAGACCCACCGCTACTGAACCCACGCCCACCCGGCGCCCGACTGAGAGAACGTACTGAGACGGGAGGTGGGTGTGGCCATGGGACATCAAACCCTGGCCACTCCTCCTCCCTACGGGCGCTCGTCGTGTAATGTTACCATAGTGACACCGCCAAGACCCAAACTAACATAACAACGCATCCCATCACCGTGACGACGGAGAATTTGCGTGGAGATGAAAGGCGGAGGATGAATACGTGTCTGTGCCATGGGTCCGATTCTTTGCTGAGATTCTTCACTCTGACCTTTCACAATgtcattaataaacataaaaaaaagctaaagagcaaaaaaaaaaaaaaaaaaatgtggtacTGAAAGCTGCGCTTAATCTGAGGGGGTTCTCCAATCAGCAAAACTCCCAGCATCTCCAGGACTAAAGctgctaattaattaatgactgCCAGCATTGA

Function

symbol description
cdk8 Predicted to enable RNA polymerase II CTD heptapeptide repeat kinase activity and cyclin-dependent protein serine/threonine kinase activity. Predicted to be involved in protein phosphorylation. Predicted to act upstream of or within phosphorylation. Predicted to be part of mediator complex. Predicted to be active in nucleus. Orthologous to human CDK8 (cyclin dependent kinase 8).

NR:

description
cyclin-dependent kinase 8

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0008353 RNA polymerase II CTD heptapeptide repeat kinase activity molecular_function

KEGG:

id description
K02208 CDK8_11; cyclin-dependent kinase 8/11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298079.1 True 2187 mRNA 0.52 13 17521783 17535395

Neighbor

gene id symbol gene type direction distance location
wasf3b wasf3,wasf3b,LOC107705209,LOC107716409,LOC107584970,LOC107654222,LOC107701678 coding downstream 1817 17504889 ~ 17519966 (-)
rpl21 rpl21,LOC107591224,LOC107701647,LOC107585018 coding downstream 38573 17479340 ~ 17483210 (-)
gtf3ab LOC100305039 coding downstream 51106 17467758 ~ 17470677 (-)
si:ch211-140b10.6 polr1d coding downstream 71359 17446518 ~ 17450424 (-)
pdx1 pdx1,LOC107580123 coding downstream 81273 17435073 ~ 17440510 (-)
LOC113541063 shisa2 coding upstream 77909 17613304 ~ 17619370 (-)
LOC113541192 LOC108256613 coding upstream 94078 17629473 ~ 17636380 (-)
LOC113541196 usf3 coding upstream 171597 17706992 ~ 17719256 (-)
naa50 naa50,LOC106579447 coding upstream 184710 17720105 ~ 17726408 (-)
flt3 flt3 coding upstream 207937 17743332 ~ 17759993 (-)
G333657 NA non-coding downstream 131670 17389862 ~ 17390113 (-)
G333656 NA non-coding downstream 132042 17389454 ~ 17389741 (-)
G333653 ccdc191 non-coding downstream 136137 17385279 ~ 17385646 (-)
G333652 NA non-coding downstream 137760 17383742 ~ 17384023 (-)
G333650 ccdc191 non-coding downstream 140547 17380855 ~ 17381236 (-)
G333700 NA non-coding upstream 6451 17541846 ~ 17542352 (-)
G333932 NA non-coding upstream 364444 17899839 ~ 17902383 (-)
G333934 NA non-coding upstream 367238 17902633 ~ 17902855 (-)
G333939 NA non-coding upstream 370513 17905908 ~ 17906806 (-)
G333971 NA non-coding upstream 389096 17924491 ~ 17924789 (-)
vipr1b vipr1,vipr1b,LOC108256372,LOC107733233,LOC107754936 other downstream 282667 17185524 ~ 17239116 (-)
zbtb47b zbtb47,znf652,LOC108256615 other downstream 382098 17116098 ~ 17139685 (-)
myd88 myd88 other downstream 632359 16885151 ~ 16889424 (-)
oxsr1b oxsr1,oxsr1b other downstream 641899 16829790 ~ 16879884 (-)
cpa6 cpa6,LOC106579545 other downstream 1208867 16281271 ~ 16312916 (-)
LOC113541127 LOC108256571 other upstream 372189 17907584 ~ 17908812 (-)
c22h11orf65 c23h11orf65 other upstream 373929 17909324 ~ 17916556 (-)
zmp:0000000991 NA other upstream 380689 17916084 ~ 17931814 (-)
mybl1 mybl1,LOC107663687,LOC107590196 other upstream 902119 18437514 ~ 18520205 (-)
pkia pkia,LOC107666628,LOC107705234 other upstream 1470103 19005498 ~ 19015855 (-)

Expression


Co-expression Network