elp6 (elp6)


Basic Information

Item Value
gene id elp6
gene name elp6
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1342979 ~ 1346644 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298082.1
gaagaagaagaagcagaaacgtgtgtgtgtttgtgtgtttgtgctgaaaTTTCTTggatataattttattgtgttgtgttacaGGCTGGCTTTATAGTCCACATGTAAACAGgtgtttaagtgtgtttctGCTTGGTCCCgagttcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagtgagaaatgtTTGCAGAGCTGAACAGCATTCTCAACACCAGCCCTGATGACGTCACTCAGagagaatTTATCCTGCTGTCAGACAGGAACGCAGATGCCTCATTCCTCCTCCATCACTTCCTCAGCTTTTATCTGAAggctggctgtaaagtgtgttttgtgGGCCTGGTTCAGTCGTTCAGTCACTACAGCGCTGTGGCTCAAAGGCTGggagTAAATCTGGTGCAGGCGAGAGAGAAAGGTCAGCTGGTGTTTGTAGAAGCTCTGAAGGCCTCGGCTGCGGTGATGCTCAATGAGAGCAGCAGTGATGTAGCGCAGCTGTTTGACTATCtcaggtccCCAGTCCCGGAGCTCAGAGCTCtgtttgagtttgtgtgtgCCTCTCTGAGTCAGGCCGAGGCAGACTCGAGCTCTCCCCCGGTGCTGATTGTGGATGATCTCAGTGTGTTGCTGAGTTTGGGCGTCAGCGTCAGAGCCGTTCTGGACTTCACACACTACTGTCAGGCCGCCATCTGCTCCcggctccagGGCTCTGTTGTAACTCTGGTGCGCTGTGacgatgaggatgaggaggaagatgatgatgatgatgatgagagctCCAGCCGTCTCCTGCGGGCTCTGACTCATCAGTGCACTCTGTCTCTGAGTGTGAAGGGGCTTCAGACCGGTTACTGCAGGGACATCCACGGCCAGGTGGAGATTTGGTGGAGAGGAACAGGAGAGAACGTGCAGAGCCAGAGAAAGATCTTTCAGTACAAAGTTTATGATAAAGGTGCGTCCTTCTTTGCACCGGGAACCTCGAGCGCCGTGCTTTAACAGTTCACCATGaagactgatgatgatgatgatgatgatgatgatgatgatgtgatgatggagGACTCATTGTGTTACTCGGACTCTGATGGCTCTCAAACATCTTTAAGGTTTTCATACAAATATATTTGGCCAACATTTCCTTACAGTTTTCAATGATATCGTGTTATTAAACAAATTTCTACTGTCA

Function

symbol description
elp6 Predicted to be involved in positive regulation of cell migration. Predicted to act upstream of or within tRNA wobble uridine modification. Predicted to be part of elongator holoenzyme complex. Orthologous to human ELP6 (elongator acetyltransferase complex subunit 6).

NR:

description
elongator complex protein 6-like

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0033588 elongator holoenzyme complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298082.1 True 1200 mRNA 0.49 8 1342979 1346644

Neighbor

gene id symbol gene type direction distance location
LOC113532999 LOC108261539 coding downstream 47450 1286989 ~ 1295529 (-)
LOC113532917 NA coding downstream 57100 1281446 ~ 1285879 (-)
LOC113533061 LOC108256273 coding downstream 67140 1273393 ~ 1275839 (-)
LOC117595783 LOC108256266,LOC108256277,LOC108256270,LOC108256272,LOC108256276,LOC108261760,LOC108261539 coding downstream 108697 1125904 ~ 1234282 (-)
si:dkey-11p23.7 siglec15 coding downstream 423070 915919 ~ 919909 (-)
sacm1lb sacm1lb,sacm1l,LOC108256262,LOC108412214,LOC107673333,LOC107709536 coding upstream 1385 1348029 ~ 1359488 (-)
gpatch3 gpatch3 coding upstream 14413 1361057 ~ 1368677 (-)
smpd5 LOC108256263 coding upstream 23110 1369754 ~ 1387049 (-)
LOC113532867 NA coding upstream 41113 1387757 ~ 1391259 (-)
grinab LOC108256260,LOC103028312,LOC108412215,LOC106588904 coding upstream 46072 1392716 ~ 1400966 (-)
G324726 NA non-coding downstream 156902 1119771 ~ 1186077 (-)
G324731 NA non-coding downstream 173648 1144586 ~ 1169331 (-)
G324729 LOC108256269,LOC108256268,LOC108256164,LOC108256276 non-coding downstream 215362 1126844 ~ 1127617 (-)
G324649 NA non-coding downstream 387587 880609 ~ 955392 (-)
G324650 NA non-coding downstream 460693 881639 ~ 882286 (-)
LOC117595768 NA non-coding upstream 322458 1669102 ~ 1674907 (-)
G324970 NA non-coding upstream 377366 1724010 ~ 1724764 (-)
G324980 NA non-coding upstream 401013 1747657 ~ 1748008 (-)
G325003 NA non-coding upstream 551067 1897711 ~ 1898181 (-)
G325056 NA non-coding upstream 560299 1906943 ~ 1948211 (-)
scap scap,LOC107600505,LOC107717374,LOC107668298,LOC107713836 other downstream 908 1294865 ~ 1342071 (-)
nek11 LOC108256279 other downstream 240862 1043313 ~ 1102117 (-)
G324579 NA other downstream 615345 726627 ~ 727634 (-)
dyrk1b dyrk1b,LOC108256247,LOC107685988,LOC107719113,LOC107592201 other downstream 767708 549060 ~ 575271 (-)
smarcc1a smarcc1,LOC107600486,LOC107666814,LOC107686050 other downstream 888156 374199 ~ 454823 (-)
G324748 NA other upstream 23832 1370476 ~ 1371029 (-)
kif13a kif13a other upstream 56620 1403264 ~ 1451000 (-)
LOC113533106 LOC108256308,LOC108256309,LOC108261853 other upstream 210372 1557016 ~ 1568506 (-)
G325145 mtmr11 other upstream 741615 2088259 ~ 2097435 (-)
LOC113532533 LOC108256344 other upstream 1883377 3230021 ~ 3251447 (-)

Expression


Co-expression Network