LOC113532854 (LOC108256544,LOC100304805)


Basic Information

Item Value
gene id LOC113532854
gene name LOC108256544,LOC100304805
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 7124011 ~ 7137119 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298089.1
tagtagttttgtttttttctattaatttaaACTTGGCTTAGCGATATGTTTAGTAAAAAGCAGTTTCTTTTTGTTGTAATGTTACTGCATCATTGCTAATAATATCACAGCTAAGCtactgtttaattattaatgcagagAATGGAGGCTTCAGCTCGAGCACAGACCTTTCTTCAGAAAAAGAAGAACGTCGGAAAGAAAAAGCAGCCCGTCTACAGTGGGGACATAGTTTTCACCAAGAATGGATCCGTTCAGACCATTCCCTCCCTCACCAAACGACTGAAAACCGTCACAGATCCAGTTATCGgTTTGCAGTATGTATGGGAGTATCGCAGCCCCAGCAAGTCAGTACCTCCTCATTACCAGTGTAGACTATGTAAGGTGCAGCGGCTACAGAATGAGATGGCCGCTCATATTACTGGATGGAAGCATTGCTTCAGATACATGAAACACGCTCACCCAGAAAAAATGCCTCATGAAGAAGAGGAAGTAACAAAGAATCCAGCTGTCAAAAAGGAAATAAGAGTGACTGCTGCTGAGGTGGAGAAGACTGAGGGCAGAGGTCAAGTCAAGGTTGTCATTAGGGAACCTGCTGATGTGCCAGTCTTTCAGAATATGAAGTCTGCATTTCCCACTGTAATGGGACCAGGTCCTACAAGTCTGCTTGGACCAATTCCTGGAGGGTTTCACCCAGGTGGACCTTTTGGTGGTGGTTTTTTGGACCCACCCTTTGCAGAGGAGTTCCCACCTCGGGGTGGCATGATGTCTGATTTTCATGGCGGCTCAGGTGATGCCCCCATGAGGAGCCCTGACTGCTACGGACCAGACAGAATGATGGGAGGTCCTGAAAGCATGCAGCATTTACCCAACAGCAGATCTATGCACATGGGCTCAGATGGATTTGGAATGGGTCTACGAAGCGAGGAAATGGGCAGACCTTACCCTGATGATCTGCCAATGAACAGCAGCGAGAGAATGATGAGATCTAAAGGCCCAGAGTCCAACAGCACCCTCGCAACACTTCTCAGATGTCTGGACACATTCCGCATTGAGTGTGAAGATGATGCTCAGATCGTGCTGAAGATCACACAGAAGCTCACGGATGTCTTGATGGAATACCGCCTCAGGACTATCTCCTCGGGACCTAGTATGAATTCTTCCCGCCTGCCACTGAGCTCCGACAGATTCTCCGGCAGTATGTCAGGCCCTTCAAGATTCTATAACTGAGAAGCCCATGTGATCCTGTCCATTTTAGTCTTAATGTGGCAACTGTTTTAATGTACTTCTCTGTATGAagctttttcatttaatattttaaattgaagACTAGATCACttgctctgtgcaggacatGTTTAAAATACATCAGGATTGGTCTGACTTTAGTGATTTGTTAATCCTAATGATTGGTGCATTTAGAGTGCTGGAAATGTTTTGTACACTGATTTCAATAAAAAGTTTAAACAA
>XM_034298090.1
ttttgaaacccGTGgccatggagagagagagagagcgcccCGCTGCGGTCCTTCCTGTTTTCGCGCAGGCGCAGTACGAAAACAGAAGCATTAGCTGTGAATAGTTTGATTTTGTCCCCCTGCTGAAAACGAAACTGAGAATGGAGGCTTCAGCTCGAGCACAGACCTTTCTTCAGAAAAAGAAGAACGTCGGAAAGAAAAAGCAGCCCGTCTACAGTGGGGACATAGTTTTCACCAAGAATGGATCCGTTCAGACCATTCCCTCCCTCACCAAACGACTGAAAACCGTCACAGATCCAGTTATCGgTTTGCAGTATGTATGGGAGTATCGCAGCCCCAGCAAGTCAGTACCTCCTCATTACCAGTGTAGACTATGTAAGGTGCAGCGGCTACAGAATGAGATGGCCGCTCATATTACTGGATGGAAGCATTGCTTCAGATACATGAAACACGCTCACCCAGAAAAAATGCCTCATGAAGAAGAGGAAGTAACAAAGAATCCAGCTGTCAAAAAGGAAATAAGAGTGACTGCTGCTGAGGTGGAGAAGACTGAGGGCAGAGGTCAAGTCAAGGTTGTCATTAGGGAACCTGCTGATGTGCCAGTCTTTCAGAATATGAAGTCTGCATTTCCCACTGTAATGGGACCAGGTCCTACAAGTCTGCTTGGACCAATTCCTGGAGGGTTTCACCCAGGTGGACCTTTTGGTGGTGGTTTTTTGGACCCACCCTTTGCAGAGGAGTTCCCACCTCGGGGTGGCATGATGTCTGATTTTCATGGCGGCTCAGGTGATGCCCCCATGAGGAGCCCTGACTGCTACGGACCAGACAGAATGATGGGAGGTCCTGAAAGCATGCAGCATTTACCCAACAGCAGATCTATGCACATGGGCTCAGATGGATTTGGAATGGGTCTACGAAGCGAGGAAATGGGCAGACCTTACCCTGATGATCTGCCAATGAACAGCAGCGAGAGAATGATGAGATCTAAAGGCCCAGAGTCCAACAGCACCCTCGCAACACTTCTCAGATGTCTGGACACATTCCGCATTGAGTGTGAAGATGATGCTCAGATCGTGCTGAAGATCACACAGAAGCTCACGGATGTCTTGATGGAATACCGCCTCAGGACTATCTCCTCGGGACCTAGTATGAATTCTTCCCGCCTGCCACTGAGCTCCGACAGATTCTCCGGCAGTATGTCAGGCCCTTCAAGATTCTATAACTGAGAAGCCCATGTGATCCTGTCCATTTTAGTCTTAATGTGGCAACTGTTTTAATGTACTTCTCTGTATGAagctttttcatttaatattttaaattgaagACTAGATCACttgctctgtgcaggacatGTTTAAAATACATCAGGATTGGTCTGACTTTAGTGATTTGTTAATCCTAATGATTGGTGCATTTAGAGTGCTGGAAATGTTTTGTACACTGATTTCAATAAAAAGTTTAAACAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298089.1 True 1467 mRNA 0.45 13 7124011 7136959
XM_034298090.1 False 1466 mRNA 0.47 13 7124011 7137119

Neighbor

gene id symbol gene type direction distance location
tmem67 tmem67 coding downstream 3042 7091541 ~ 7120969 (-)
LOC113532636 NA coding downstream 37146 7075199 ~ 7086865 (-)
glipr2l glipr2,glipr2l,LOC107706057,LOC107689891 coding downstream 52649 7066998 ~ 7071362 (-)
si:dkey-12j5.1 LOC108256403,LOC108426361 coding downstream 94584 6954760 ~ 7029427 (-)
LOC113532609 LOC108256720 coding downstream 174986 6944781 ~ 6949025 (-)
LOC113532705 LOC108256546,LOC100304805 coding upstream 4371 7141490 ~ 7154574 (-)
invs invs,LOC107596027,LOC107706121 coding upstream 47958 7185077 ~ 7223848 (-)
stx17 stx17 coding upstream 111269 7248388 ~ 7268807 (-)
nr4a3 nr4a3 coding upstream 142442 7279561 ~ 7310012 (-)
galnt1 galnt1,LOC107657719,LOC107723435 coding upstream 316755 7453874 ~ 7568606 (-)
G328215 tbrg4 non-coding downstream 91287 7031364 ~ 7032724 (-)
G328083 NA non-coding downstream 382965 6648296 ~ 6741046 (-)
G327560 NA non-coding downstream 1039362 6083366 ~ 6084649 (-)
G327508 NA non-coding downstream 1285734 5837883 ~ 5838277 (-)
G327507 NA non-coding downstream 1286229 5837489 ~ 5837782 (-)
G328439 NA non-coding upstream 239768 7376887 ~ 7378436 (-)
G328565 NA non-coding upstream 311054 7448173 ~ 7448967 (-)
G328562 NA non-coding upstream 313278 7450397 ~ 7452117 (-)
G328580 NA non-coding upstream 371750 7508869 ~ 7509107 (-)
G328588 NA non-coding upstream 421276 7558395 ~ 7558649 (-)
G328342 LOC108256401 other downstream 61583 7056794 ~ 7062428 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other downstream 740423 6256403 ~ 6383588 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other downstream 1145632 5829474 ~ 5978379 (-)
ubr5 ubr5 other downstream 2146484 4932155 ~ 4977527 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other downstream 2776758 4308606 ~ 4347253 (-)
sec61b sec61b,LOC102796100 other upstream 241612 7378731 ~ 7386347 (-)
LOC113541109 NA other upstream 3014378 10151497 ~ 10156800 (-)
G330185 NA other upstream 3385613 10522732 ~ 10523263 (-)
ackr4b ackr4 other upstream 3786007 10923126 ~ 10930775 (-)
G330379 NA other upstream 3945149 11082268 ~ 11083151 (-)

Expression


Co-expression Network