sulf1 (sulf1)


Basic Information

Item Value
gene id sulf1
gene name sulf1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 16537653 ~ 16632052 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298094.1
gcgcgcgcgctcacaCGCGGAGGacatttcttctttctcatcAGAGAGCGCGCGCGACATTGTTTTACAAACTTCCGACCCGGAAGTGGGAAATGTATGGGACGCCCTTGATGATGAATTGCTAATGGATGTCTTGAAAATAGTCTCCTTCCACTGATTAACTCAAGCCATGTTAACCCAGgtgaaaggagagagagagagagagagagagagacaaatcaCTAGCAAACTTTCCTCCAGTGAGGTCGTTCTAATGAAGGAAGTTAatatagtttgtttgtttttgggtttttttctggcTGTAGGCTACAAACTCATCACACTGAAGCCCAGCTCTCATTAAACTCATTAAGGCATTAATGGGCTTCAGACATCTGTTTAAGCAGGTTACGGTGACCGGAGTTTGCAGACATCTCTAGcgtccccctttttttttcccttgccTTGTGTCCTTGTCCCTGCCTCCAGCCTGGGAAGAGCCACCCAGCGACCTCTCTGATTGGACCTGCTGGTTTGTCTTGACGCGGGTTGAGCGGTGCGAACTGGAGGACGTGTTTCAACAGATGGTTAGGGTTTGGTGTGTGTCATCACATTGAAGAAAGGATTAGAGGAGGAAGGTTGTCCTCCGGGAGCTGTGTGGTCCCCACTTACAGCAGCGCAGCTTCAGGAGAGAGCGCAAAGTGAGGACGCAGTTCTCGCTTCATCTGCAGCACGACACTTTTCCGCTCTTGTGTGTCAGaTTGGCTTGTGAAAAGCTCCATAGTGCAGCAGCGTCATCCTCTCTGTCTTCCATCATGAAGCCCGTGTGCCTGGCATGGCTGTTGGCCTTTGCCCTGGCCTCTCCACTGTCCTGCTCGGCCTCCACCACACGGAGTCAGAGCCTTCGGGGCCGAGTGCAGCGAGACCGCCGCAACATACGCCCCAACATCATCCTCATCATGACCGATGACCAGGACGTAGAGCTGGGCTCATTGCAGGTGATGAATAAAACTCGTAGAATCATGGAGGAAGGTGGCACAATGTTCACTAACGCCTTTGTGACGACGCCCATGTGCTGCCCGTCCCGCTCGTCCATGCTGACGGGGAAGTACGTTCACAACCACAACACATACACCAACAACGAGAACTGCTCCTCTCCGTCATGGCAGGTACAGCATGAGCCTCGCTCCTTCGCTGTCTACCTCAACAACACAGGTTACAGGACAGCTTTCTTCGGGAAATACCTCAACGAGTACAACGGCAGCTACATTCCTCCTGGGTGGCGCGAGTGGGTGGGGCTCATCAAAAATTCCCGCTTCTATAATTACACAGTCTGTAGGAACGGCTACAAGGAGAAGCACGGAGCGGACTATGCCAAGGACTACTTCACAGATCTGATCACCAACGACAGCATCAACTTCTTCCGCATGTCAAAGCGCATGTACCCGCACCGGCCAGTTATGATGGTGATCAGTCACGCGGCACCCCACGGTCCAGAAGATTCGGCGCCCCAGTATGCAGAGTTCTTCCCCAATGCCTCCCAGCACATCACACCCAGTTACAACTACGCTCCTAACATGGACAAGCACTGGATCATGCAGTACACGGGCCCTATGAAGCCCATCCACATGGAGTTCACTAACTTCCTTCAGAGGAAACGACTGCAGACTCTGATGTCCGTAGATGACTCTGTGGAAAAGATATACAATGCACTAGTGGACACAGGCGAGTTGGACAACACCTACATCATCTATACAGCAGACCATGGTTACCACATTGGACAGTTTGGTCTGGTCAAGGGGAAGTCAATGCCATACGACTTTGATATAAGAGTCCCGTTCTTTGTGAGGGGGCCAAATGTGGAACCTGGAACCAGGAACAATCACCTTGTTTTAAACATTGATCTGGCGCCTACGATCCTGGACATCGCAGGCCTGGATACTCCTTCAGATATGGACGGCAAGTCCATCCTGAAGCTTCTGGAGCAGGAGAAGTCTAACAATAGattcaAACTGAACCGCAAACCTAAGGTCTGGAGAGACACATTCCTTGTGGAGAGAGGCAAAATTCTGCGCAAGAAAGAAGAGACCACGAGCAGCGTGAGCACAGCGCATACCAACAGTCTGCCCAAGTACAAGAAGGTCAAAGAGGCATGCCAGCAGGCCGAGTTTCAGACGCCCTGTGAACAGCCTGGACAGaaatggcACTGCGTAGTGGATGTTGCGGGGAAGTGGCGCCTGCAGAAGTGTAAGGGCAGCCTGAAGGCAGCGTCCAGGAAGAGGGCACGCAGCCTGAGACTGCGCTCCTACAGCGCCCGTGGGAAAGAGTGCCACTGCGAAGACAGAGCGTATAAAGCGGCAAAGAGTGAACGCCGAGCACACAGACACCTCTCACAGAGCAGCAGACCAAGTTACAGGCCGCGTTTCGTCCACACTCGGCACGCACGCTCGCTTTCAGTGGAGTTCGAGGGTGAGATTTACGCCGTGGACCTGCAGGAGGATGACAAGCTGGCTGCAGAGCCCCGGCCGATCAGCAAGCGCCATTACGAGCCCGAAACCTCCTTTGACCCTGACTTTAATCTGGAGTCGGATGATGCTTCAGAGGAGATGCTGGCTGATGATACTAATGCTGTCGGCTACCCCAATTCACTCAAAGTCACACACAAATGCTACATCCTGCTGAATGACACCGTGCGCTGTGAAAGAGAGATCTATCAGTCTTCCAAAGCCTGGAAAGATCACAAGAGTTTCGTCGACCAGGAGATCGAGCTGCTCCAGGATAAGATGAAAAAGTTACGAGAAGTCCGCGGGCACCTGAAAAGCAGAAAGCCAGATGAGTGTGACTGTGGAAAGAAAAGCTACTATAGCAAAGAGAAAGAGGACAGAAACAAACCGGAGAGGGTGAAGAGCAGGAATGGCCGTCTCCATCCCTTTAAAGAAACGGTGCAGGAGGTGGACAGCAAGGCCCAGCTCTATAACGAGATCCGTcgaaggaagaaagagaggaaagagaggaagaggcaGAGGAAGGGAGACGACTGTAGCCTGCCTGGTCTCACCTGCTTCACCCACAACAACGACCACTGGCAGACCGCCCCCTTCTGGAACCTGGGAGGTTTCTGTGCCTGCACCAgttccaataacaacacatacTGGTGTCTGAGGACCATAAATGAAACCCACAACACGCTCTTCTGCGAGTTTGCAACTGGATTCCTGGAGTACTTCGATCTGAACAGTGACCCTTACCAGTTGAGCAATGCGGTTTACACGGTGGATCGAGACGTCCTGAACCAGCTCCATCTGCAGCTGATGGAGTTGAGGAGCTGCCAGGGCCACAAGCAGTGCAACCCCAGACCCAAAAGCACAGACACAGGGAGTAAAGATGGAGGAAGCTCTGATCCACACAGCACACAACCTGCATGGGGCGGGCGCCGACCTTAAGCTGCCCAACTTCACTGAGGACGCCAACTGGCAAGGACTGGCACAACTGTACAGCGTGAACGAGAGTCTGTTTGAGCACAGACACGACTACAGTCCCAGCCTGGAAGACTGGGCCAACTTTGCGAAGGATGTAGATAGTATGTTT

Function

symbol description
sulf1 Predicted to enable N-acetylglucosamine-6-sulfatase activity and glycosaminoglycan binding activity. Acts upstream of or within with a positive effect on epithelial structure maintenance. Acts upstream of or within several processes, including neuromast deposition; regionalization; and vasculogenesis. Predicted to be located in Golgi stack and extracellular space. Predicted to be active in cell surface; endoplasmic reticulum; and plasma membrane. Is expressed in several structures, including cardiovascular system; central nervous system; head; hypochord; and somite. Orthologous to human SULF1 (sulfatase 1).

NR:

description
extracellular sulfatase Sulf-1 isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0009986 cell surface cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0008484 sulfuric ester hydrolase activity molecular_function

KEGG:

id description
K14607 SULF; extracellular sulfatase Sulf

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298094.1 True 3567 mRNA 0.52 21 16537653 16632052

Neighbor

gene id symbol gene type direction distance location
c22h8orf34 c23h8orf34,cunh8orf34,LOC103047203 coding upstream 8536 16444663 ~ 16529117 (+)
prex2 prex2,LOC107741010,LOC107686687,LOC107758281,LOC107695383 coding upstream 94509 16326985 ~ 16443144 (+)
LOC113541322 NA coding upstream 318640 16200496 ~ 16219013 (+)
hephl1a LOC108256642 coding upstream 440882 16076891 ~ 16096771 (+)
panx1a panx1 coding upstream 907688 15620148 ~ 15629965 (+)
LOC113541353 slco5a1,LOC108256392,LOC107741005,LOC107686683,LOC107584939,LOC107695420,LOC107758302 coding downstream 7053 16639105 ~ 16684971 (+)
LOC113541068 LOC108256337 coding downstream 173594 16805646 ~ 16818439 (+)
acaa1 acaa1,LOC107701655,LOC107758307,LOC107741015,LOC107591283,LOC107670419 coding downstream 321632 16953684 ~ 16960846 (+)
plcd1a plcd1 coding downstream 352995 16985047 ~ 17014794 (+)
spag6 spag6,LOC107686700,LOC107741767,LOC107727238 coding downstream 442161 17074213 ~ 17085476 (+)
G332859 NA non-coding upstream 316708 16219553 ~ 16220945 (+)
G332791 NA non-coding upstream 435056 16102271 ~ 16102597 (+)
G332790 LOC108272979,LOC108266882 non-coding upstream 435441 16101750 ~ 16102212 (+)
G332788 NA non-coding upstream 496066 16041384 ~ 16041587 (+)
G332650 NA non-coding upstream 920419 15592088 ~ 15617234 (+)
G333232 NA non-coding downstream 100864 16732916 ~ 16829979 (+)
LOC113541357 NA non-coding downstream 256854 16888906 ~ 16890161 (+)
G333244 map3k20,LOC108439325,LOC108256334,LOC102795565,LOC101475626 non-coding downstream 260954 16893006 ~ 16897855 (+)
G333360 NA non-coding downstream 554077 17186129 ~ 17186675 (+)
G333548 NA non-coding downstream 730819 17362871 ~ 17363075 (+)
G332636 NA other upstream 970990 15566175 ~ 15566663 (+)
stau2 stau2,LOC107691439 other upstream 1222685 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other upstream 1271758 15251635 ~ 15265895 (+)
G331476 NA other upstream 3279237 13257894 ~ 13258416 (+)
G331263 LOC108256200,LOC100304628 other upstream 3824975 12706939 ~ 12712678 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 468112 17100164 ~ 17110027 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other downstream 653030 17285082 ~ 17302004 (+)
rnf6 rnf6,LOC106590444 other downstream 903892 17535944 ~ 17542387 (+)
pan3 pan3,LOC107705213 other downstream 1129479 17761531 ~ 17796521 (+)
G333943 LOC108256468 other downstream 1354710 17986762 ~ 17993014 (+)

Expression


Co-expression Network