LOC117595788


Basic Information

Item Value
gene id LOC117595788
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17287140 ~ 17290895 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298096.1
ATATTATGAGTTGTATATATTCATGCCTCCATTTTATCTTCTGCAGTTTGGGACTCTTTACTGCTACAGTAATAATGGCTTTGTGTGGAGGGCTCGCCAAGGTGGAAGAGGCCACTGCTGAGGTGCAGCAAATCTGTGATAAGATGAAGCCTCATGCAGAGCAAAAAGCAGGAAGAAAGTTTCAAATCTTCACTGCTAAATCCTACAAGACACAGGTGGTAGCTGGAACGAACTATTTCATCAAGGTCCATGTGGGTGGCAATGACTATGTTCACCTGCGTATCTATAAGACGCTGCCACACGATGGAGAAAAACTGGCACTTCATGGAATACAGACACCCAAAGCCCATCAGGACCCCATCGAATACTTCTGAACATACACTCCATTAAGAAAGAGACACCATCGaaactgcactaacacacataaacaggaaCTGTATTTGAATTTGTATTCCATATGGAATGTCACTGGCTTAAAACTGAGTGACATTAATCACAACCTGTTTATTCCTTTTTACTTCATAAGCTGACAAGAAATGAGCTGCTTCTTCAATTAATAAAAAGGCAGTGATAAATATCAGTCATTTACAATCTCTCAATTCCTTTTAAAATTGATCGAACAAATGGAGTGGTGTTTGGTATTTGATGTGTTTATAATATGTCCATCTTGAAGAATGCAATACCTGTAATGAGATTAaaggtaaaaataaacattgacaCATGA

Function

GO: NA

KEGG:

id description
K13907 CSTA_B; cystatin-A/B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298096.1 True 724 mRNA 0.39 4 17287140 17290895

Neighbor

gene id symbol gene type direction distance location
LOC113541296 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 coding upstream 404 17285104 ~ 17286736 (+)
sec22c sec22c coding upstream 115542 17163000 ~ 17171598 (+)
klhl40b klhl40,LOC108256616,LOC107701660,LOC107754945,LOC107585012,LOC107591253,LOC107733151 coding upstream 171364 17111768 ~ 17115776 (+)
gars1 gars,LOC107591252,LOC107754935,LOC103377215,LOC107733158,LOC102797257 coding upstream 188795 17086210 ~ 17098345 (+)
spag6 spag6,LOC107686700,LOC107741767,LOC107727238 coding upstream 201664 17074213 ~ 17085476 (+)
LOC113541297 LOC108256406 coding downstream 5678 17296573 ~ 17299390 (+)
fam162a NA coding downstream 19826 17310721 ~ 17315700 (+)
si:ch211-161h7.8 LOC108256135 coding downstream 38939 17329834 ~ 17333509 (+)
drd3 drd3 coding downstream 45297 17336192 ~ 17353309 (+)
ccdc191 ccdc191 coding downstream 87406 17378301 ~ 17390639 (+)
G333360 NA non-coding upstream 100465 17186129 ~ 17186675 (+)
G333244 map3k20,LOC108439325,LOC108256334,LOC102795565,LOC101475626 non-coding upstream 389285 16893006 ~ 16897855 (+)
LOC113541357 NA non-coding upstream 396979 16888906 ~ 16890161 (+)
G333232 NA non-coding upstream 457161 16732916 ~ 16829979 (+)
G333148 NA non-coding upstream 653357 16605148 ~ 16633783 (+)
G333548 NA non-coding downstream 71976 17362871 ~ 17363075 (+)
G333582 NA non-coding downstream 155290 17446185 ~ 17447043 (+)
G333787 NA non-coding downstream 376741 17667636 ~ 17667844 (+)
G333791 NA non-coding downstream 379521 17670416 ~ 17670625 (+)
G333779 usf3 non-coding downstream 416827 17707722 ~ 17712380 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other upstream 177113 17100164 ~ 17110027 (+)
G332636 NA other upstream 1720477 15566175 ~ 15566663 (+)
stau2 stau2,LOC107691439 other upstream 1972172 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other upstream 2021245 15251635 ~ 15265895 (+)
G331476 NA other upstream 4028724 13257894 ~ 13258416 (+)
rnf6 rnf6,LOC106590444 other downstream 245049 17535944 ~ 17542387 (+)
pan3 pan3,LOC107705213 other downstream 470636 17761531 ~ 17796521 (+)
G333943 LOC108256468 other downstream 695867 17986762 ~ 17993014 (+)
mtfr1 mtfr1 other downstream 1024459 18315354 ~ 18323295 (+)
mcmdc2 mcmdc2 other downstream 1176983 18467878 ~ 18486009 (+)

Expression


Co-expression Network