eif5a (eif5a2,eif5a,LOC107590245,LOC107685442,LOC107586748)


Basic Information

Item Value
gene id eif5a
gene name eif5a2,eif5a,LOC107590245,LOC107685442,LOC107586748
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 20369151 ~ 20375049 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298113.1
attcctttttttcttggaaTGCCCCTTGATTAGATCCCACCATGGCAGATCCAGATCTTGATTTCACCAGCGGAGACGCCGGGGCCTCTGTGACGTACCCGCAGCAGTGCAGCGCCCTGCGCAAAAACGGCTTCGTGGTCCTGAAGGGTCGTCCCTGCAAAATCGTCGAGATGTCCACTTCCAAGACCGGAAAGCACGGCCACGCTAAGGTTCACCTGGTTGGTATCGATATTTTCACTAATAAGAAGTATGAAGATATTTGTCCCTCCACCCACAACATGGACGTCCCCAACATAAAGAGAAACGACTTCCAGCTGGTGGACATTAACGAGGGCTTCCTGTCTCTCATGATGGACAACGGTGATGTGCGCGAGGACCTGCGTGTTCCTGAGGGTGACCTGGGCAAGGAGATCGAATCCAAACACGGCGCTGGTGAAGACATGATGATTACCGTGCTCTCAGCGATGGGTGAAGAGGCCGCAGTCGGCATCAAGGCCTTTACCAAATAGGAAGAGCGCgggcgagcgagagagagagagagagagagagagagagagagagagagagactgggctGCTCAGGCTGCAACATGCACCACATTAAAATCTCCtgctttttggttttgtttcttCACCAAAGCTCTGGCCTTCACACACAACCTCACAACtcttctggtgtttttttttttccttttaaataatCCCTGTTCCTCGTTCCAGTTACTCtgctgggtgttttttttttttttttttttttaggttgtttTGGCATTCTCACagatcagatttatttttaggttcttttagattattatttttcattccaCTATGATTTGCCTTCATGATGTTTGTCAGGCCACTTACATTCCTGAGTGTTAAAACGGGATCCATTTGCCATATGtataaaatctcacacacacacagataaacacacacacacacacacacacacacacatcattacttTGCAGAATTGATGCCTTTCAGTGGAATATGTGCACAATGCGTTTTAAAGAAGGGGAAGAAACGGCCCTCGCTGACACTCACCAATTTTTATTCCCCTCACTGCCTTAAGGGTGCcataactttcttttttttcctttgttttttttttttataaacatggTTGGTTCTGTATCTGCACTAAGGTCAGCTCTCTCGGTTGATGCCTTTACCCAAAGTGAGATGCAAGTGTCCTGGTAGTTAGCACTTTGTAGTACTTGGAGTACTTTGAGTACTACtcgaaacactttttttttgtttgtttttttttttttagtaaaatcaCTAAGACAGAAATAAACTTCAGTGGAATTTATAAGCGCCGGTCTCCATTGTGACGTGGACAGAAGGATGTGATGGCCATGTGCAAGTACCTCTGTAACGCAATAGCAGCCTGGTTCCGGCTGTCAGACCTTAAATAAAGTGTTGAAGCCTG

Function

symbol description
eif5a Predicted to enable translation elongation factor activity. Predicted to be involved in positive regulation of translational elongation. Predicted to act upstream of or within several processes, including mRNA transport; positive regulation of translational termination; and translation. Predicted to be located in endoplasmic reticulum membrane and nucleus. Predicted to be part of nuclear pore. Is expressed in endoderm; intestine; liver; pancreas; and swim bladder. Orthologous to several human genes including EIF5A (eukaryotic translation initiation factor 5A).
eif5a2 Predicted to enable translation elongation factor activity. Predicted to be involved in positive regulation of translational elongation. Predicted to act upstream of or within several processes, including mRNA transport; positive regulation of translational termination; and translational elongation. Predicted to be located in endoplasmic reticulum membrane and nucleus. Predicted to be part of nuclear pore. Orthologous to human EIF5A2 (eukaryotic translation initiation factor 5A2).

NR:

description
eukaryotic translation initiation factor 5A-1-like isoform X1

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0006452 translational frameshifting biological_process
GO:0045901 positive regulation of translational elongation biological_process
GO:0045905 positive regulation of translational termination biological_process
GO:0008612 peptidyl-lysine modification to peptidyl-hypusine biological_process
GO:0043022 ribosome binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03263 EIF5A; translation initiation factor 5A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298113.1 True 1437 mRNA 0.45 5 20369151 20375049

Neighbor

gene id symbol gene type direction distance location
rpl22l1 rpl22l1,LOC102776745 coding downstream 2510 20364456 ~ 20366641 (-)
LOC113541302 NA coding downstream 5415 20361593 ~ 20363736 (-)
slc7a14b slc7a14,slc7a14b,LOC107586809,LOC107721826,LOC107685444 coding downstream 13132 20340889 ~ 20356019 (-)
skilb LOC108256440 coding downstream 60109 20295943 ~ 20309042 (-)
lrrc31 lrrc31 coding downstream 76097 20281611 ~ 20293054 (-)
tnikb tnik,tnikb,LOC103024681,LOC107685441,LOC106578374,LOC108440401,LOC107721871,LOC107725857,LOC103377179 coding upstream 1630 20376679 ~ 20437831 (-)
pld1b pld1b,LOC108256388,LOC108413108,LOC107663701,LOC107685440,LOC107586751,LOC107721916 coding upstream 70190 20445239 ~ 20488144 (-)
zmynd11 zmynd11 coding upstream 351484 20726533 ~ 20740879 (-)
LOC117595766 NA coding upstream 636449 21011498 ~ 21013434 (-)
G335498 NA non-coding downstream 174770 20121516 ~ 20194381 (-)
LOC113541188 NA non-coding downstream 196227 20167317 ~ 20172924 (-)
G335460 NA non-coding downstream 307992 20060024 ~ 20061159 (-)
G335404 NA non-coding downstream 466815 19879892 ~ 19902336 (-)
G335232 NA non-coding downstream 580093 19788583 ~ 19789058 (-)
G335800 NA non-coding upstream 285579 20660628 ~ 20661829 (-)
G335831 NA non-coding upstream 369510 20744559 ~ 20745016 (-)
G335859 NA non-coding upstream 547858 20922907 ~ 21002111 (-)
G335868 NA non-coding upstream 641897 21016946 ~ 21018572 (-)
G335865 NA non-coding upstream 647908 21022957 ~ 21024079 (-)
otos otos,LOC108440409 other downstream 120690 20246451 ~ 20248461 (-)
cops9 NA other downstream 122840 20242488 ~ 20246311 (-)
G335523 NA other downstream 186739 20179412 ~ 20182412 (-)
cnksr2a cnksr2,cnksr2a other downstream 401347 19889039 ~ 19967804 (-)
G335165 amer2 other downstream 765458 19600727 ~ 19603693 (-)
fndc3bb fndc3b,fndc3bb,LOC108434945 other upstream 122039 20497088 ~ 20557959 (-)
stag1b stag1,stag1b,LOC108434968,LOC107590250 other upstream 185041 20560090 ~ 20591616 (-)
G335788 larp4b other upstream 235183 20610232 ~ 20612309 (-)

Expression


Co-expression Network