si:dkey-199f5.8 (LOC108256292,LOC106605235,LOC108437381,LOC106582539,LOC102233588)


Basic Information

Item Value
gene id si:dkey-199f5.8
gene name LOC108256292,LOC106605235,LOC108437381,LOC106582539,LOC102233588
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 806641 ~ 816145 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298117.1
TTATTTCCGATGTTCCCACCAGAGCAGGAAGTGATGTTATGAACCGGCGCCAGCGATGCACGCTCTCGCATGCGTCGGTCGCGTGTGTGAGCTCGCAGAGATCTAAATCGTATAACTCGTTTCTGAAGAGTTCGTCCCCCACCAGTGCCTTCTGTATCAGATCCCAGAGATAGCCACTTCCTCGTTGTTTATATCTCGACCACCATGTTCTAGTTTATTACAATTAAACTTCCTTCGTGCGTTAATGGACGCTCTGCGTGCCGTCTCCGTCGCCCGACCGCAGCTCCGTTATCAGATATGAGACCTCCGTAGACTGAGGTCACCTCAAACTCGCTTCTGTTTTCGCTTTAAACGCCTCGCCGAGTGAACCGGACTCACCATGCCCACCCTGACCTCCAAGTGGCGCTATCTGATCATGCTGCTTGGCGTGCAGCTCATCGTCATGGCCCTCCTGTCCAGAGAGACTTACCAGAAAAGAGTGACGTATTTTTTCCGGATCTTCCGCAAACTGGATGTGCTGAGCGGCGTCTCCGGGTCGGGAACGGCTCACGGGTCGAACCACACCGGCGCCGACGTCTACGCCAACCTGTCCCAACTGGCGCTGTTGTCCAGGAGTGAGGACATGCGCTACTGCCCTAACACATCACCACTACTCAGTGGGCCGATCCACGTCAGCTTCCCCTCAGGACTCACACTCGCTCAGGTGGAGAGGAAGAATCCCCTGGTGGTGCGCGGGGGACGCTACAGGCCTCCGGACTGTGAGGCCCGGCATCGCACCGCTATAATCATTCCCCACAGGAACAGAGAAAAGCATCTGAAGTTCCTCCTGTACTACCTACACCCGTTCCTACAGCGACAACAGCTGAGCTACGGCATCTACGTCATCCACCAGgccGGTAACTACACGTTTAACCGGGCGAAGCTGATGAACATCGGGTTCCGTGAGGCGATGAGGGAGATGGACTGGGACTGTCTGTTCTTCCACGACGTGGATCTGATCCCCGAGGACGACCGCAACACGTACACGTGCGACAAAAACCCCAAACACGCCGCCATCGCCATGGACAAGTTCGGCTACAAattgCCCTATAAGGCGTATTTCGGCGGCGTGTCAGCACTGAGTCCTCTACACTATCTGAAGATGAACGGCTTCCCCAACAACTACTGGGGCTGGGGGGGTGAAGACGACGACATCGGCATCCGCGTGTCTCTGGCCGGGATGTCCATCAGTCGTCCGTCTCTGAGGATCGGCCGCTACAAGATGATCAAACACAAACTGGACGAGGGCAACGAGGTCAACCCTAAaagGTTCAGTTTGTTGGCGAAGACGCAGCAGACGTGGAAGTCGGACGGGATGCACTCGGTGGAGTACGAGCTCCTCTCCCGGGAATACCTGCCGCTCTACACCAACATCACCGTCAACATCGGCACCGAGCGCGGCCTGCGACCTCTGACCCCTAAACCCAAGGCCAAAGAGCGTGCAGAGAACCGACCTGGACGCTGACACACGctgaccccacacacacacacacacacacacacacacacacacacacacgcaaagagAGTGCAGGGACGACGTCTGAATGGAGTGCGTAGTTTGGGGGCGGAGCCTCTTTAGTGCATAAATCAGGTTATAAACTctagtgccatctcttcctctctctctctctctctctctcttcctctctctcttcctctctcttcctctctcacttcctctctctctctctcctctct

Function

NR:

description
PREDICTED: beta-1,4-galactosyltransferase 3-like

GO: NA

KEGG:

id description
K07968 B4GALT3; beta-1,4-galactosyltransferase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298117.1 True 1740 mRNA 0.56 6 806641 816145

Neighbor

gene id symbol gene type direction distance location
gramd1a gramd1a,LOC108256231 coding upstream 61121 719389 ~ 745520 (+)
LOC113524791 LOC108256242 coding upstream 126271 674868 ~ 680370 (+)
pycard NA coding upstream 142665 658481 ~ 663976 (+)
etsrp LOC108256243 coding upstream 149249 650918 ~ 657392 (+)
zgc:162160 LOC108256255,LOC108437392,LOC107719116,LOC107666762,LOC107737835,LOC107592933 coding upstream 282484 505314 ~ 524157 (+)
cep85 cep85 coding downstream 15700 831845 ~ 843562 (+)
atp2c1 atp2c1,LOC107666823,LOC107592020,LOC107668304,LOC107600500 coding downstream 41965 858110 ~ 893602 (+)
rpp25l LOC108256289 coding downstream 88318 904463 ~ 906704 (+)
LOC117595801 NA coding downstream 92483 908628 ~ 914250 (+)
cmtm7 cmtm7,cklf7,LOC106606093 coding downstream 107020 923165 ~ 930865 (+)
G324216 NA non-coding upstream 53198 749451 ~ 753443 (+)
G324197 NA non-coding upstream 92840 713395 ~ 713801 (+)
G324160 NA non-coding upstream 199098 607045 ~ 607543 (+)
G324156 alkbh8 non-coding upstream 207471 598410 ~ 599170 (+)
G324125 NA non-coding upstream 217732 585179 ~ 588909 (+)
G324284 scap,LOC102785784,LOC107600505 non-coding downstream 494766 1310911 ~ 1315115 (+)
G324294 scap,LOC107666822,LOC107600505,LOC107713836 non-coding downstream 513502 1329647 ~ 1330871 (+)
G324303 NA non-coding downstream 523383 1339528 ~ 1368639 (+)
G324305 NA non-coding downstream 524980 1341125 ~ 1342780 (+)
G324328 NA non-coding downstream 562401 1378546 ~ 1378940 (+)
psmc4 psmc4,LOC107719110 other upstream 113 774289 ~ 806528 (+)
G324206 NA other upstream 58166 745673 ~ 748475 (+)
G324123 NA other upstream 171596 567202 ~ 635045 (+)
G324161 fbl,LOC107719117,LOC107666874,LOC107737817,LOC107686016,LOC107600489 other upstream 196632 607612 ~ 610009 (+)
G324143 NA other upstream 248502 557415 ~ 558139 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other downstream 140439 956584 ~ 1010223 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other downstream 302123 1118268 ~ 1163614 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other downstream 1083481 1899626 ~ 1919710 (+)
bola1 bola1,LOC107592543 other downstream 1326047 2142192 ~ 2144525 (+)
LOC113533074 LOC108256184 other downstream 1388701 2204846 ~ 2215410 (+)

Expression


Co-expression Network