atp2c1 (atp2c1,LOC107666823,LOC107592020,LOC107668304,LOC107600500)


Basic Information

Item Value
gene id atp2c1
gene name atp2c1,LOC107666823,LOC107592020,LOC107668304,LOC107600500
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 858110 ~ 893602 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298120.1
CGCGAGCGTTAACGCGAGACTCAGCAGCGCGACGCTACACGGCACTGACACTCACGGCGCTGACGTCATCAACCGGCGCCCGAGCAGCAGCGGTGGTTTTTTGCGGAAGAtgctgaagaaaaaagagcagctgcTTGCAGAGAGTCAAACGCAGAGTGAAAATGAGACCATGGTCCCGGTACTAACATCCAAAAGAGCCAGTGAACTTCCTGTCAACGAAGTAGTGTGTGCGCTGCAGgccgACCTGCAGTTTGGTCTCTCTGATGCGGAGGTGAGCAGGAGGAGAGCGTATCACGGCTGGAATGAGTTTGAAATCAGCGAGGACGAGCCGCTCTGGAGGAAGTACCTGTCTCAGtttaagGATCCTCTCATCATGTTGCTCCTGGCGTCGGCGGTGATCAGCGTAGTGATGCGTCAGTTTGACGACGCCGTCAGCATCACcgtgGCCATCATCATCGTCGTTACTGTGGCCTTCGTGCAGGAATACCGCTCGGAGAAATCCCTGGAGGAATTGGGGAAGCTGGTGCCTCCGGAATGTCACTGtgtgagagagGGTCATCTGGTTCACATGCTGGCGAGGGAACTCGTACCTGGAGACACAGTTTGCCTGTCTGTGGGTGAGAGAGTCCCGGCTGACCTCCGCCTTTTTGAGgcagtAGATCTGAGTGTAGATGAGTCCAGTCTGACGGGTGAGACCACGCCCTGCTCTAAGACGGTCTCCCCTCAGATGGTCAGTGGAGATCTCACGTCCCGTAGCAACATCGCCTTCATGGGGACGCTGGTGTGCTCTGGCAAGGCCAAGGGCATCGTCATAGGTACGGGCGAGAGCTCCGAATTCGGAGAAGTCTTCAAAATGATGCAAGCAGAAGAGTCGCCTAAAACGCCGCTGCAGAAGAGCATGGACGTTCTTGGGAAGCAGCTCTCGCTCTACTCCTTCTGCATCATAGGTGTCATCATGATGGTGGGATGGCTGCAGGGGAAAAACATCCTGGACATGTTCACTATCGGAGTCAGcctggCGGTAGCCGCTATCCCTGAAGGCCTGCCCATCGTGGTGACGGTCACGCTCGCTCTGGGAGTGATGAGGATGGTGAACAAGAGAGCCATCGTCAAGAAGCTGCCCATAGTCGAGACACTGGGTTGCTGTAACGTGATCTGCTCGGATAAAACGGGAACGCTGACGAAGAACGAGATGACGGTCACGCAGATCTTCACCTCTGATGGACAGCGTGCGGAGgtgacaggtgtGGGCTATAACGGAGCAGGTGAGGTGCTCATAGACGGGAAGATGGTTCACGGCTTCTCCAACATCTCCATCAGTAAACTCGTGGAGgctggctgtgtgtgtaacGACGCTGTAGTGAGGAACAACGCGCTGATGGGTCGACCCACAGAGGGCGCTCTCATCGCCCTGGCCATGAAGgTGGGACTGGAAAGCGTGCAGCAGGAGTTTGTGCGTTTGGAAGAGATCCCGTTCTCCTCGGAGCAGAAGTGGATGGCTGTTCGCTGCGTCCATCGCACTCAGCAGGACAAACCCGGAGAGTTTTTCGTGAAAGGAGCCTTCGAGAAAGTGATCCAGTTCTGCAAGACGTACCACAGTAAAGGCGTGTCAGTGCCTCTGAGTAACCAGCAGAGGGCGCTGTACCAGCAGGAGAAGACCTACATGGGCAGTGCGGGACTCAGAGTCCTCGCCTTCGCCTCAGGAGCTGAAATGGGTTCTCTGACGTTCCTCGGTCTGGTCGGCATCATCGATCCTCCGAGGTCGGGCGTTAAGGAAGCCGTGACGACGCTGGTCAGCTCCGGAGTGTCCGTCAAGATGATCACCGGAGACTCTCAGGAGACGGCCGTGGCCATCGcgaaTCGTCTGGGTCTGTACGCTAAAGGAGCTCAGTGTTTGTCCGGAGACGAGGTGGATGTCATGGACATTCAGGAGCTCTCGCAGATCGTCTCCAGGacGGTGGTGTTTTACAGAGCAAGTCCCAGACACAAGCTGAAAATAGTCAAGTCTCTGCAGAACATCGGTGCCGTGGTGGCGATGACGGGCGACGGCGTGAACGACGCTGTAGCTCTGAAAGCGGCCGACATCGGCGTGGCGATGGGGCAGTCCGGCACGGACGTGTGTAAGGAAGCGGCGGACATGATCCTGGTGGACGACGACTTCCAGACCATCATGTCAGCCATCGAGGAGGGAAAAGGCATTTACAACAACATCAAGAACTTTGTGCGTTTTCAGCTCAGCACGAGTATCGCGGCTCTCACACTCATCTCTCTGGCCACGCTGATGAATTTCCCGACCCCCCTGAACGCCATGCAGATCCTCTGGATCAACATCATCATGGACGGACCTCCAGCTCAgagTTTGGGCGTTGAGCCCGTGGACGGCGACGTGATCCGTAAACCTCCACGAAACGTGCGAGACAGCATCCTGACACGCAGCCTGATCGTCAAGGTGCTCGTCTCGTCCTTCATCATCGTCTGCGGCACGCTCTTCGTCTTCTGGAGAGAGctgcgTGACAACGAGATCACACCACGTGACACCACCATGACCTTCACCTGCTTCGTCTTCTTCGATATGTTCAACGCCCTCAGCTCTCGCTCACagacccGTATGGTACATGAGATAGGGTTGTGCAGTAACAGGACGTTCTGCTTCGCTGTACTCGCCTCCATCATGGGCCAGCTGCTCGTCATCTACTTCCCTCCACTGCAGAAAGTCTTTCAGACCGAGAGCCTCAGCATTCTGGATCTGCTCTTCCTGGTCTGCCTGACGTCCTCCGTGTGCTTCGTGTCCGAACTCATAAAGATGCTGGAGAggtggagaggaggaggagaaaaagcagaaaaagaggAGTGTGACTCTTTCCATGACGTATGACGAACGTTGCATCTCTGTGAGGAGCGAACGCCGTCGTCTTGTGGAGGGGGGAGGGGTTTCGGGGGGGT
>XM_034298121.1
cacacacacactcgtgcacacttgcgcacacacactctcaggacGTTTCTTCAGAGTCGGACGCATGGTTTACTTCCGAGGGTTACCGGgagaacattttaattttattctgaaCACGACTTCTCTGtgagactctctctctttctctctctctctctctctctctcacacacacacacacacacacacacacacacacacgttcttcaCAGGAGGACGACacgttttctccttttttccttttttttcgttcctggtgttcagaggcTCCTCGGGGCAGTCGGAGCCGTAATCATGcTTGCAGAGAGTCAAACGCAGAGTGAAAATGAGACCATGGTCCCGGTACTAACATCCAAAAGAGCCAGTGAACTTCCTGTCAACGAAGTAGTGTGTGCGCTGCAGgccgACCTGCAGTTTGGTCTCTCTGATGCGGAGGTGAGCAGGAGGAGAGCGTATCACGGCTGGAATGAGTTTGAAATCAGCGAGGACGAGCCGCTCTGGAGGAAGTACCTGTCTCAGtttaagGATCCTCTCATCATGTTGCTCCTGGCGTCGGCGGTGATCAGCGTAGTGATGCGTCAGTTTGACGACGCCGTCAGCATCACcgtgGCCATCATCATCGTCGTTACTGTGGCCTTCGTGCAGGAATACCGCTCGGAGAAATCCCTGGAGGAATTGGGGAAGCTGGTGCCTCCGGAATGTCACTGtgtgagagagGGTCATCTGGTTCACATGCTGGCGAGGGAACTCGTACCTGGAGACACAGTTTGCCTGTCTGTGGGTGAGAGAGTCCCGGCTGACCTCCGCCTTTTTGAGgcagtAGATCTGAGTGTAGATGAGTCCAGTCTGACGGGTGAGACCACGCCCTGCTCTAAGACGGTCTCCCCTCAGATGGTCAGTGGAGATCTCACGTCCCGTAGCAACATCGCCTTCATGGGGACGCTGGTGTGCTCTGGCAAGGCCAAGGGCATCGTCATAGGTACGGGCGAGAGCTCCGAATTCGGAGAAGTCTTCAAAATGATGCAAGCAGAAGAGTCGCCTAAAACGCCGCTGCAGAAGAGCATGGACGTTCTTGGGAAGCAGCTCTCGCTCTACTCCTTCTGCATCATAGGTGTCATCATGATGGTGGGATGGCTGCAGGGGAAAAACATCCTGGACATGTTCACTATCGGAGTCAGcctggCGGTAGCCGCTATCCCTGAAGGCCTGCCCATCGTGGTGACGGTCACGCTCGCTCTGGGAGTGATGAGGATGGTGAACAAGAGAGCCATCGTCAAGAAGCTGCCCATAGTCGAGACACTGGGTTGCTGTAACGTGATCTGCTCGGATAAAACGGGAACGCTGACGAAGAACGAGATGACGGTCACGCAGATCTTCACCTCTGATGGACAGCGTGCGGAGgtgacaggtgtGGGCTATAACGGAGCAGGTGAGGTGCTCATAGACGGGAAGATGGTTCACGGCTTCTCCAACATCTCCATCAGTAAACTCGTGGAGgctggctgtgtgtgtaacGACGCTGTAGTGAGGAACAACGCGCTGATGGGTCGACCCACAGAGGGCGCTCTCATCGCCCTGGCCATGAAGgTGGGACTGGAAAGCGTGCAGCAGGAGTTTGTGCGTTTGGAAGAGATCCCGTTCTCCTCGGAGCAGAAGTGGATGGCTGTTCGCTGCGTCCATCGCACTCAGCAGGACAAACCCGGAGAGTTTTTCGTGAAAGGAGCCTTCGAGAAAGTGATCCAGTTCTGCAAGACGTACCACAGTAAAGGCGTGTCAGTGCCTCTGAGTAACCAGCAGAGGGCGCTGTACCAGCAGGAGAAGACCTACATGGGCAGTGCGGGACTCAGAGTCCTCGCCTTCGCCTCAGGAGCTGAAATGGGTTCTCTGACGTTCCTCGGTCTGGTCGGCATCATCGATCCTCCGAGGTCGGGCGTTAAGGAAGCCGTGACGACGCTGGTCAGCTCCGGAGTGTCCGTCAAGATGATCACCGGAGACTCTCAGGAGACGGCCGTGGCCATCGcgaaTCGTCTGGGTCTGTACGCTAAAGGAGCTCAGTGTTTGTCCGGAGACGAGGTGGATGTCATGGACATTCAGGAGCTCTCGCAGATCGTCTCCAGGacGGTGGTGTTTTACAGAGCAAGTCCCAGACACAAGCTGAAAATAGTCAAGTCTCTGCAGAACATCGGTGCCGTGGTGGCGATGACGGGCGACGGCGTGAACGACGCTGTAGCTCTGAAAGCGGCCGACATCGGCGTGGCGATGGGGCAGTCCGGCACGGACGTGTGTAAGGAAGCGGCGGACATGATCCTGGTGGACGACGACTTCCAGACCATCATGTCAGCCATCGAGGAGGGAAAAGGCATTTACAACAACATCAAGAACTTTGTGCGTTTTCAGCTCAGCACGAGTATCGCGGCTCTCACACTCATCTCTCTGGCCACGCTGATGAATTTCCCGACCCCCCTGAACGCCATGCAGATCCTCTGGATCAACATCATCATGGACGGACCTCCAGCTCAgagTTTGGGCGTTGAGCCCGTGGACGGCGACGTGATCCGTAAACCTCCACGAAACGTGCGAGACAGCATCCTGACACGCAGCCTGATCGTCAAGGTGCTCGTCTCGTCCTTCATCATCGTCTGCGGCACGCTCTTCGTCTTCTGGAGAGAGctgcgTGACAACGAGATCACACCACGTGACACCACCATGACCTTCACCTGCTTCGTCTTCTTCGATATGTTCAACGCCCTCAGCTCTCGCTCACagacccGTATGGTACATGAGATAGGGTTGTGCAGTAACAGGACGTTCTGCTTCGCTGTACTCGCCTCCATCATGGGCCAGCTGCTCGTCATCTACTTCCCTCCACTGCAGAAAGTCTTTCAGACCGAGAGCCTCAGCATTCTGGATCTGCTCTTCCTGGTCTGCCTGACGTCCTCCGTGTGCTTCGTGTCCGAACTCATAAAGATGCTGGAGAggtggagaggaggaggagaaaaagcagaaaaagaggAGTGTGACTCTTTCCATGACGTATGACGAACGTTGCATCTCTGTGAGGAGCGAACGCCGTCGTCTTGTGGAGGGGGGAGGGGTTTCGGGGGGGT

Function

symbol description
atp2c1 Predicted to enable ABC-type manganese transporter activity and P-type calcium transporter activity. Acts upstream of or within manganese ion homeostasis and manganese ion transport. Predicted to be located in membrane. Predicted to be active in Golgi membrane; endoplasmic reticulum; and plasma membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Hailey-Hailey disease. Orthologous to human ATP2C1 (ATPase secretory pathway Ca2+ transporting 1).

NR:

description
PREDICTED: calcium-transporting ATPase type 2C member 1-like isoform X2

GO: NA

KEGG:

id description
K01537 ATP2C; P-type Ca2+ transporter type 2C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298120.1 False 2943 mRNA 0.56 27 858110 893602
XM_034298121.1 True 3107 mRNA 0.55 27 866394 893602

Neighbor

gene id symbol gene type direction distance location
cep85 cep85 coding upstream 14548 831845 ~ 843562 (+)
si:dkey-199f5.8 LOC108256292,LOC106605235,LOC108437381,LOC106582539,LOC102233588 coding upstream 41965 806641 ~ 816145 (+)
gramd1a gramd1a,LOC108256231 coding upstream 112590 719389 ~ 745520 (+)
LOC113524791 LOC108256242 coding upstream 177740 674868 ~ 680370 (+)
pycard NA coding upstream 194134 658481 ~ 663976 (+)
rpp25l LOC108256289 coding downstream 10861 904463 ~ 906704 (+)
LOC117595801 NA coding downstream 15026 908628 ~ 914250 (+)
cmtm7 cmtm7,cklf7,LOC106606093 coding downstream 29563 923165 ~ 930865 (+)
cmtm6 NA coding downstream 40552 934154 ~ 955393 (+)
LOC113525078 LOC108256274,LOC108256268,LOC108256164 coding downstream 210137 1103739 ~ 1124181 (+)
G324216 NA non-coding upstream 104667 749451 ~ 753443 (+)
G324197 NA non-coding upstream 144309 713395 ~ 713801 (+)
G324160 NA non-coding upstream 250567 607045 ~ 607543 (+)
G324156 alkbh8 non-coding upstream 258940 598410 ~ 599170 (+)
G324125 NA non-coding upstream 269201 585179 ~ 588909 (+)
G324284 scap,LOC102785784,LOC107600505 non-coding downstream 417309 1310911 ~ 1315115 (+)
G324294 scap,LOC107666822,LOC107600505,LOC107713836 non-coding downstream 436045 1329647 ~ 1330871 (+)
G324303 NA non-coding downstream 445926 1339528 ~ 1368639 (+)
G324305 NA non-coding downstream 447523 1341125 ~ 1342780 (+)
G324328 NA non-coding downstream 484944 1378546 ~ 1378940 (+)
psmc4 psmc4,LOC107719110 other upstream 51582 774289 ~ 806528 (+)
G324206 NA other upstream 109635 745673 ~ 748475 (+)
G324123 NA other upstream 223065 567202 ~ 635045 (+)
G324161 fbl,LOC107719117,LOC107666874,LOC107737817,LOC107686016,LOC107600489 other upstream 248101 607612 ~ 610009 (+)
G324143 NA other upstream 299971 557415 ~ 558139 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other downstream 62982 956584 ~ 1010223 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other downstream 224666 1118268 ~ 1163614 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other downstream 1006024 1899626 ~ 1919710 (+)
bola1 bola1,LOC107592543 other downstream 1248590 2142192 ~ 2144525 (+)
LOC113533074 LOC108256184 other downstream 1311244 2204846 ~ 2215410 (+)

Expression


Co-expression Network