txndc5 (txndc5)


Basic Information

Item Value
gene id txndc5
gene name txndc5
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 8944385 ~ 8955194 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298134.1
TAGAAAGCGCAAGCAGCGCAGTCCCCTTTCATTCACTGTGGTTGAGTGTCATCATGGCCACATCATCGCTGAAAATGCACCGGGTTTTAATAAGTGTCCTTTGCAGTGCATTTCTCTTTAGTGTAATATTGTGCGATAATGGAACAGACGAGGATGAGCATACCAAGCATACTTACACAGTGGAGATGTTCAACAACGCTATTCCGACTGCTCCACACTTCGTGATGTTCTTCGCACCTTGGTGTGGTCACTGTCAGAGGCTGCAGGGGACCTGGAATGAGCTGGCTGAAAAATACAACACCATGGAATCTCCCCCTGTCTATGTGGTTAAAGTAGATTGCACAAAGGACACAAAGTTTTGCTCCAGCAACCATGGTATTCGGGGATATCCCACTTTGAAGCTGTTTAAACCTGAGCAAGAAGCAGTGAAGTATCAGGGCCCAAGAGACCTGCATTCCCTAGAGACCTGGATGCTGAAAACTCTTCAGGAGGAGCCAGAGGTGCCACAGAGTGAGCCTGAGGCTCCCAAAGTGCCAGAGCCCCTGCAGGGCATGTATGAGCTTACTGCCTCCAACTTCAAAGCACATATATCCAAAGGCTCTCACTTTGTGAAGTTCTTTGCACCATGGTGTGGCCATTGCAAAGCTATGGCTCCCACATGGGAGCAGCTTGCCACCAGTTTCGAACACTCAGACTTGGTCAAGATTGGCAAGTTAGACTGTACTCAGCATTATGAGATCTGTTCAGAGAACCAGGTGCGAGGCTACCCCACGTTGCTCTTCTTTACAGATGGAGAAAAGGTAGAACAGTACAGGGGAAAACGTGATCTGGAGTCCTTTAAAGAATTTGTGGATAATCAGTTAGCAGCTGCCTCTTTAATAGATAAGGATGCTGCTGAAGATGCAAAAGGCAATGAAATACCACAGAACACAGATTCTGTTAAAGATGAGTCCACTGTTAAAATCCTCACTGAAAGCAACTTTGACGAGTCTATTGCTAAAGGGATTTCCTTCATCAAGTTTTATGCTCCTTGGTGTGGCCACTGCAAGAACCTGGCTCCTGTTTGGGAGGACCTGTCTAAGAAGGACTTTCCTGGCCTGACTGATGTCAAGATTGCTAAAGTGGATTGCACTGTAGAGAGGACACTCTGCAACAGATTTTCAGTGAACGGATACCCGACACTGCTGATATTCCGAGGAGGCCAGTTGGTGGAAGAGTATAATAGTGGACGGGACTTGGAGAGCTTGCACAGCTTTGTCATGAAGCAAGCCAGAGATGAGCTGTAGCTCTACCTCATTACTCACAAATATCCTGTACTTATACCTGATCTTGTTCTGTGTTTTCTACTAGCTAGGCTAGCATGTATTTCCATAAATGAAAACATGCTCCTGCAGAAATATACAAAAGCCATTCTTCAACTTTCCATTCTTGTCTATTTTTTTATGAGAGCAGTTACTATAATTTTATCATTAAGTGAAATCTGAATGTATTTGATTTCAGCTAAGGGCGTTTCACTTGGAGACCAATGGATGGAAAAGGTACTTCTGATTGACAACCACTTTTCCAGTAATAGAAatacctcctttttttttttttttaaaaactgtctaTTCAACATTTAGTTAGCATTATAATCTGGCTTATTGGGCCAGCAATACAGTTTACTGTTACTCTAAGAAGAATCTTGTAACTTGGCTCTCAGGGAGAactttttgtgttaaataagGAGTTGTTCCTTCATTCTGCCTTTTCACCCCAGTTCATAGACGTCTTTTACACTTAAAAACTGCACATTTGTGTTTCGTCTCATATAAGGTTTGCCTGTGGGAAAACTCAGCCTTTAAAGCCATCTTCAGTCATCACTTGTCTGTATGTTTCCCAATTTATCTTACTTATTACACCTGACCAGTTGATCAACATACCCTTTTAGAGCTAGTACACAGTGATTAGTGCAGGCAAAACACAAGTCCTAGACTCACATTGAGAACCAGTGGTGGGGTTTTAGGGAGATTTCTGAAACGTAATTTTTCTGCAGAAGCCTTTATCTTGACTAGAAAATACTTGACTAGAAAATGTAACTTTTGATTCAAGAATTAGCATCATGTTATGACActtgaaaattaaaatgctaaaacatcAATTTTAGCACTACTTATAAGTTTAAACGAACACTGCGATCTTGTATATGTATGATTATTCTCACATACATTTTATTGGGTTTCTTCTATACCTTTTTCTATACCTGAAAgatttatgaaagaaaaaacacatacacattgtCCATGCAGAATGCAGTACATGCAGAAGCAGAGCAGTATCTTTCACTACCAAATGAT

Function

symbol description
txndc5 Predicted to enable protein disulfide isomerase activity. Predicted to be involved in apoptotic cell clearance. Predicted to be located in endoplasmic reticulum lumen. Orthologous to human TXNDC5 (thioredoxin domain containing 5).

NR:

description
thioredoxin domain-containing protein 5

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0006662 glycerol ether metabolic process biological_process
GO:0015035 protein disulfide oxidoreductase activity molecular_function
GO:0016853 isomerase activity molecular_function

KEGG:

id description
K13984 TXNDC5, ERP46; thioredoxin domain-containing protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298134.1 True 2336 mRNA 0.41 10 8944385 8955194

Neighbor

gene id symbol gene type direction distance location
si:dkey-197c15.6 NA coding downstream 107554 8830847 ~ 8836831 (-)
cavin1b LOC108426559,LOC103029568,LOC108256430,LOC107664665,LOC107742253,LOC107550021,LOC107655802,LOC107755710 coding downstream 278530 8652432 ~ 8665855 (-)
rpgrip1 NA coding downstream 297876 8589264 ~ 8646509 (-)
LOC113532599 nipal2,LOC107731686,LOC107594621,LOC107705020 coding downstream 622225 8308408 ~ 8322160 (-)
fzd6 fzd6 coding downstream 659665 8273940 ~ 8284720 (-)
bloc1s5 bloc1s5 coding upstream 7578 8962772 ~ 8967175 (-)
mak mak coding upstream 496180 9451374 ~ 9472412 (-)
gcm2 gcm2,LOC107664656,LOC107707735,LOC107654664,LOC107552658 coding upstream 548943 9504137 ~ 9510189 (-)
elovl2 elovl2,LOC101268971 coding upstream 597401 9552595 ~ 9572205 (-)
mppe1 mppe1 coding upstream 732361 9687555 ~ 9717566 (-)
G329447 NA non-coding downstream 2027 8942137 ~ 8942358 (-)
G329438 NA non-coding downstream 23372 8920280 ~ 8921013 (-)
G329404 NA non-coding downstream 93073 8847485 ~ 8851312 (-)
LOC117595776 NA non-coding downstream 105391 8823190 ~ 8838994 (-)
G329290 NA non-coding downstream 193341 8750842 ~ 8751044 (-)
G329461 NA non-coding upstream 55267 9010461 ~ 9010665 (-)
LOC117595798 NA non-coding upstream 94046 9049240 ~ 9050902 (-)
LOC117595799 NA non-coding upstream 102021 9057215 ~ 9081783 (-)
G329531 NA non-coding upstream 394272 9349466 ~ 9349837 (-)
G329686 NA non-coding upstream 620190 9575384 ~ 9575695 (-)
sec61b sec61b,LOC102796100 other downstream 1558038 7378731 ~ 7386347 (-)
G328342 LOC108256401 other downstream 1881957 7056794 ~ 7062428 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other downstream 2560797 6256403 ~ 6383588 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other downstream 2966006 5829474 ~ 5978379 (-)
ubr5 ubr5 other downstream 3966858 4932155 ~ 4977527 (-)
LOC113541109 NA other upstream 1196303 10151497 ~ 10156800 (-)
G330185 NA other upstream 1567538 10522732 ~ 10523263 (-)
ackr4b ackr4 other upstream 1967932 10923126 ~ 10930775 (-)
G330379 NA other upstream 2127074 11082268 ~ 11083151 (-)
cdv3 cdv3 other upstream 2988860 11944054 ~ 11996700 (-)

Expression


Co-expression Network