si:dkey-12l12.1


Basic Information

Item Value
gene id si:dkey-12l12.1
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 10975774 ~ 10980139 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298149.1
AGTATAAAACGCAGGAAGAAAACTGCCAAGCTGACAGTCTTCCATACTCATtctttctcacaaacacactctcttaTAGCAATGAACACACTGTTGTGGGTTTTCCTGCTGTGTATGCAGGGCTACCTGCTAACATACGCTCTAGACTGTGCAGATGGGGGCATGGATTGTGACAGTGGCCAGGTCGAAAGGGTAAAGTCAAGGGTTTTGAGGCACACAAACCCAGACCATGAGAGGGGAGCTCACCAGAGCCAAGCAAACCTACCAGGAGCCTTTACAGCCAAGGGCAGCCCCAACACTCTAATTCAGGCTGACAGATCACGGCGTCATCTGAACAGCAATAAGAAGAGACCATTGCCTCCTAGGTCACGAGTGGGCAGTTATTCACTGCTCAGTCACAACCCTATGAGTCCTCTGCCAGTAGTGAGAGCTCGAAGGCATGCTGGAGATGCTGCTGCTGATCCGGCCATACCTTCTACAATGACAGTGAAGCAGAGGCCCAGGAGAAGTGCAaccaggaagaagaagaacacaaAAGCTGCAGTCTGCTCATGAAGTGGGACATTTGTAGtgaaaaagtcaaaaacaaTCCAAAAGCAAATACAGCGATGCACATATTAAGGTCATCTATATTTAGTCCATCTGTTCACTTACATGCTGTCATTTAAGGTGTTTCTTGAAGGTTTTTTATGCTTCAAGGTAAAAATAGTTGTGATGTTATTTAAAAGTCAGTTTTTGATTATCATCACAGTAACTCCTATCACTGTCCGTAATCTGGCTTCTATAAGGTTTATTGTTGTCAAATTTTTAAGGTTTTGTCCTAGGCAAATGTCTAAATTGGACTACTTCACTGTCATCCTTAAGGTATTACTGTGTATATTGTTTGGAAAATATCAGCGATCCACTGATCAAATggtaaaatacaagaaaacacaaacattcatacagggaaaaaaaaagctcagcaTTTATAGGACACTGGAAGAGATCAAGTACTCATTTACTATTTTATAGTgcgtaagtttttttttttgcagaatttgGGCCTGTTGATCTGCAAATGcagaagatatttttgtgtAGAACATATTAATAAGCGCAACTCAAACCTCCACAATGTCGGGCTGTAGCAATCAAATACCCAGCTTAAAGCAATTATAGTCCTGTATATTTaactgaaagtgttttttttttttattcaattttattaaacCTTTATAAAAAAGATTCTTTGTTCTTCTAATATACTAAATTATACAAGTCTATACAGAGTACTTTTCAAGAATATTTTCTGGTCTGGTGTCAGTTTCTGATTAAAGTTACTGCTGATTAAACATTCATTATATCAAACTTCAAACAGTGAGAGATGATGTATTAAAGTTGTCAGTCATTTGGTGTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298149.1 True 1401 mRNA 0.39 5 10975774 10980139

Neighbor

gene id symbol gene type direction distance location
LOC113541360 NA coding downstream 690837 10284834 ~ 10284937 (-)
LOC113532851 NA coding downstream 1156241 9796334 ~ 9819533 (-)
mppe1 mppe1 coding downstream 1258208 9687555 ~ 9717566 (-)
elovl2 elovl2,LOC101268971 coding downstream 1403569 9552595 ~ 9572205 (-)
gcm2 gcm2,LOC107664656,LOC107707735,LOC107654664,LOC107552658 coding downstream 1465585 9504137 ~ 9510189 (-)
LOC113541107 NA coding upstream 126275 11106414 ~ 11109555 (-)
prlh2 prlh coding upstream 328615 11308754 ~ 11310736 (-)
zfand1 zfand1,LOC107739158,LOC107681457,LOC107554718 coding upstream 375033 11355172 ~ 11368763 (-)
si:dkey-37o8.1 si:dkey-37o8.1,LOC108256503,LOC108434235,LOC107681461,LOC105019383,LOC103369707 coding upstream 505933 11486072 ~ 11488628 (-)
myca myc coding upstream 725442 11705581 ~ 11708414 (-)
G330289 NA non-coding downstream 136222 10839130 ~ 10839552 (-)
G330287 NA non-coding downstream 139422 10836089 ~ 10836352 (-)
G330278 NA non-coding downstream 144188 10831371 ~ 10831586 (-)
G330274 NA non-coding downstream 156457 10782106 ~ 10819317 (-)
G330277 prpf4b non-coding downstream 162936 10810669 ~ 10812838 (-)
G330344 NA non-coding upstream 2730 10982869 ~ 10983322 (-)
G330345 NA non-coding upstream 4891 10985030 ~ 10985651 (-)
G330598 NA non-coding upstream 340432 11320571 ~ 11321045 (-)
G330608 NA non-coding upstream 374529 11354668 ~ 11355077 (-)
G330610 NA non-coding upstream 390165 11370304 ~ 11371028 (-)
ackr4b ackr4 other downstream 44999 10923126 ~ 10930775 (-)
G330185 NA other downstream 452511 10522732 ~ 10523263 (-)
LOC113541109 NA other downstream 818974 10151497 ~ 10156800 (-)
sec61b sec61b,LOC102796100 other downstream 3589427 7378731 ~ 7386347 (-)
G328342 LOC108256401 other downstream 3913346 7056794 ~ 7062428 (-)
G330379 NA other upstream 102129 11082268 ~ 11083151 (-)
cdv3 cdv3 other upstream 963915 11944054 ~ 11996700 (-)
LOC113541288 NA other upstream 1696406 12676545 ~ 12677938 (-)
LOC113541105 NA other upstream 2777519 13757658 ~ 13762615 (-)
LOC113541102 msc other upstream 3952856 14932995 ~ 14937404 (-)

Expression


Co-expression Network