ccl34b.4 (LOC100304628)


Basic Information

Item Value
gene id ccl34b.4
gene name LOC100304628
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 12710626 ~ 12712651 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298168.1
AAAGAGAAGCATCCTCACAGTTACCAACCAGTAGCTGACTGAAACCAACCCACTGAAAGATCTACCCACTGAGAACCATGCTGGATTGCAGTAAAAACTGGCACACTTTTTTGGTTGTGCTGCTTGCACTTTTTGGATGCATCACCGCTGCACCTGGTAACTATCGTCGACCTACCAAAGTTGGTCTCGTGTGCTGTGAGGCAGTCTCCAAAGCAGTTATACCACCTTCTATAAAGCTCACTGCATACAAGCGCCAGAATGCCCTGAAACCTTGTGTGGAAGCTGTCATATTTTTCTCagagaatgaaaaatattgCTCTGACCCTGCTGCACGCTGGATCccaaagaaaatgaaagGTTTGACAGAGATCAAGGAATGAAAATGCCAGACAAATCGTTTGCAGCCACCTTCCTTTTtgcctgcaatattttttacatacattaaaagcaaaaaataaaaattaaaaaaaaaaataataatattaataaataaatatgttgcATTACTTCAAACAGTTTTACATACAATGCAAGGTAGAATGTAGACCGTTTTGCATGACTTAATGTACACCTACGTAGTGCTAGGAACCATTATGCTCCAAGGTCAGGTTTTACTATGACTGTAAGCTTTGCTGTAACCCTTTGTATcgctttattttaatgtgcttcCACCAGTTTAATATAGTCGACAGTTTAAATACTGTGAACTCTTAAAGCTACTtgattaatgaaaataatgatgCATAGTAGTACGGTTCACCTTTAAAATTTCATAGTTTTTGAAAAAGGACATATGTGCTTACTTTAATACAAGTGTACTGAATTCTTAGAAGCCTCAAGGCTTCTTTGTTGTTCCTCTATGTAAACTCCTACAAATGAGTGTTTTTCTATCAGTAACGATCCCAAGTAGAATGCTACTTTCACACGTAATCGATCTTGCTTCAGTAAGTCCAGAGAGAGTTGACGAGTGTTTGCTTTACCTAGGTAGTAAGCAACACCTACTGAAACTGACGTATAATATCTGTGTcatatattgcaatatttgtaatatttgcaGAATATTTTATAAGCAATGTCTGCATTTTCACCAATGAAACAGTCTACATAATAAAACACCATtaccttgcaaaaaaaaa

Function

NR:

description
PREDICTED: C-C motif chemokine 8-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298168.1 True 1136 mRNA 0.37 4 12710626 12712651

Neighbor

gene id symbol gene type direction distance location
LOC113541349 LOC108256200 coding upstream 2623 12706939 ~ 12708003 (+)
hs6st1b hs6st1b,LOC108256600,LOC108434959,LOC107558548,LOC107697682,LOC107677314,LOC107729660,LOC107590258,LOC106579591 coding upstream 211580 12428457 ~ 12499046 (+)
bcl2a bcl2 coding upstream 476443 12181785 ~ 12234183 (+)
LOC113541340 LOC108256745,LOC108434245 coding upstream 531005 12162455 ~ 12179621 (+)
vps41 vps41,LOC107722032,LOC107558337,LOC107748298 coding upstream 767118 11900755 ~ 11943508 (+)
LOC113541231 cntnap2,cntnap2a,LOC108256453,LOC108256478,LOC108256479 coding downstream 53909 12766560 ~ 13015109 (+)
cul1b cul1,LOC107686696,LOC107595130,LOC107727219,LOC107741709,LOC107695409 coding downstream 308516 13021167 ~ 13042516 (+)
skida1 skida1 coding downstream 562009 13274660 ~ 13278025 (+)
armc3 armc3 coding downstream 609686 13322337 ~ 13334525 (+)
msrb2 msrb2,LOC107735060 coding downstream 623687 13336338 ~ 13341661 (+)
G331161 NA non-coding upstream 260279 12448762 ~ 12450347 (+)
G331003 NA non-coding upstream 437336 12211250 ~ 12273290 (+)
G330976 NA non-coding upstream 567761 12141943 ~ 12142865 (+)
G330962 NA non-coding upstream 676567 12024576 ~ 12034059 (+)
G330911 cdv3 non-coding upstream 764388 11944030 ~ 11946238 (+)
G331277 NA non-coding downstream 20158 12732809 ~ 12733703 (+)
G331280 NA non-coding downstream 28466 12741117 ~ 12741678 (+)
LOC113541232 NA non-coding downstream 84710 12797361 ~ 12802125 (+)
G331342 NA non-coding downstream 331664 13044315 ~ 13049452 (+)
G331343 NA non-coding downstream 338391 13051042 ~ 13051859 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other upstream 553839 12062332 ~ 12156787 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other upstream 962067 11717415 ~ 11748559 (+)
acad11 acad11,LOC107715568,LOC104947469 other upstream 1726417 10874209 ~ 10984209 (+)
G330257 NA other upstream 1735711 10973264 ~ 10974915 (+)
gli3 gli3,LOC108444237 other upstream 1942266 10595130 ~ 10768360 (+)
G331476 NA other downstream 545243 13257894 ~ 13258416 (+)
stau2 stau2,LOC107691439 other downstream 2421702 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other downstream 2538984 15251635 ~ 15265895 (+)
G332636 NA other downstream 2853524 15566175 ~ 15566663 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 4387513 17100164 ~ 17110027 (+)

Expression


Co-expression Network