zgc:112408 (zgc:112408,LOC108256202,LOC108438348,LOC107721840)


Basic Information

Item Value
gene id zgc:112408
gene name zgc:112408,LOC108256202,LOC108438348,LOC107721840
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17960988 ~ 17963471 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298173.1
GTGTGCAATATGACTGAAAGAACTCGCAGCAAAGTGGATGTCAGTGTCTTTGGTGATGTGAATGAAGAATTTCAGACAGATGTGGGTCGGTCGAAGAGCTTGGGTTTCTGTGGGCTTCTCCTCACGGCTCTGTCTTTTCTATTCATTCTCATGACCTTCCCAATTTCTGTATGGTGCTGCTTAAAGATCGTCAAGGAATATGAGAGAGCAGTTATTTTCCGTTTAGGGCGACTCCTCGGCGGAGCGAAGGGACCCGGTATATTCTGGATCCTTCCATGTGTGGACACTTTTCGCAAGGTTGATCTGAGGACGGTGTCGTTCAACATTCCTCCTCAGGAGTTGAGTATCTTTTAGTTAGTGCTGACCAAAGACTCGGTGACCATCATGGTAGACGGCGTGGTGTATTACAGAGTTTTTGATCCTACAATGTCTATTACTAAAGTAGAAGATGCTAATCTGGCTACGCAGATGCTGGCGCAAACCACTCTGAGGAACATGTTGGGCACCAAGAGCTTGGCGGACATTTTGCGAGACCGTGAGGAGATGGCGGAACAGATGGAGGAAGTGCTGTATTCTGCGTCTAAGAACTGGGGGATTAAACTCGAGCGGGTGGAGCTGAAGGATGTCAAACTGCCCCAGACTTTACAGAGAGCCATGGCTGCTGAGGCTGAGGCCACCAGAGAGGCTCGCGCCAAGGTGATAGCTGCTGAGGGGGAGATGAAGGCCTCATGTGCACTGAAGGAGGCGGCAGACGTCATGTCCGAGTCTCCGGCTGCTCTCCAGCTGCGCTACCTGCAGACGCTGGCTGAGATCGCCACAGAGAGGAACTCCACCGTGGTCTTCCCCATTCCCATGGACCTCATTACCAGCTTCATGAGGAAGTGACCACACACCTGAAAATCTCAACTCCATAAAGTCCtggattattatttaattctttatacTAAAACATATTGTTCAGAAATTGCACCACTAGGAAATGTGTGTAGATACTAGAATAAAGGCTGGAGGTCTGGACTAAGCAACAGATCCTGGATTTTTGAGAGGTctgaattcatatttattttacagactacactacattatacaTAAACTAACAAACTGACATACTGTaggtatatttaaatataaatacatgtacATAACAGTTgattatatcatatataatttCAGACTTTTT

Function

symbol description
zgc:112408 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane.

NR:

description
PREDICTED: erythrocyte band 7 integral membrane protein-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298173.1 True 1180 mRNA 0.46 7 17960988 17963471

Neighbor

gene id symbol gene type direction distance location
chodl chodl coding upstream 9362 17942428 ~ 17951626 (+)
atp6v1ab atp6v1a,atp6v1ab,LOC107599937,LOC107687683,LOC107591235,LOC107716398,LOC107654231 coding upstream 221403 17727853 ~ 17739585 (+)
boc boc coding upstream 254870 17678898 ~ 17706118 (+)
LOC113541191 cfap44 coding upstream 307375 17636383 ~ 17653613 (+)
spice1 spice1 coding upstream 331503 17621946 ~ 17629485 (+)
lipib LOC108256469,LOC108438884,LOC107721863,LOC107705251,LOC107590204 coding downstream 9733 17973204 ~ 17983420 (+)
ythdf3 ythdf3,LOC107666630,LOC107705256 coding downstream 124176 18087647 ~ 18097915 (+)
bhlhe22 bhlhe22 coding downstream 251392 18214863 ~ 18217206 (+)
dnajc5b dnajc5b,LOC107586796,LOC107663636,LOC107656153,LOC107721861 coding downstream 409251 18372722 ~ 18378196 (+)
trnaa-agc_15 NA coding downstream 415831 18379302 ~ 18379374 (+)
G333938 NA non-coding upstream 53307 17907366 ~ 17907681 (+)
G333937 NA non-coding upstream 55763 17904953 ~ 17905225 (+)
G333801 LOC108256577,LOC108442200 non-coding upstream 110193 17849795 ~ 17850795 (+)
G333799 NA non-coding upstream 203059 17757724 ~ 17757929 (+)
G333798 NA non-coding upstream 204190 17756558 ~ 17756798 (+)
G333966 NA non-coding downstream 49456 18012927 ~ 18015594 (+)
G333953 eif1axb,EIF1AX,LOC102359197,LOC106603066,LOC107726370,LOC105905255 non-coding downstream 58268 18021739 ~ 18026962 (+)
G334005 NA non-coding downstream 80353 18043824 ~ 18045177 (+)
G334028 NA non-coding downstream 115680 18079151 ~ 18079370 (+)
G334032 NA non-coding downstream 121848 18085319 ~ 18108804 (+)
pan3 pan3,LOC107705213 other upstream 164467 17761531 ~ 17796521 (+)
rnf6 rnf6,LOC106590444 other upstream 418601 17535944 ~ 17542387 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other upstream 658984 17285082 ~ 17302004 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other upstream 850961 17100164 ~ 17110027 (+)
G332636 NA other upstream 2394325 15566175 ~ 15566663 (+)
G333943 LOC108256468 other downstream 23291 17986762 ~ 17993014 (+)
mtfr1 mtfr1 other downstream 351883 18315354 ~ 18323295 (+)
mcmdc2 mcmdc2 other downstream 504407 18467878 ~ 18486009 (+)
G334373 NA other downstream 729678 18693149 ~ 18717953 (+)
LOC117595806 zfhx4,LOC107590192 other downstream 748577 18712048 ~ 18747477 (+)

Expression


Co-expression Network