Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC113541107 |
| gene name | NA |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 11106414 ~ 11109555 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| id | name | namespace |
|---|---|---|
| GO:0090304 | nucleic acid metabolic process | biological_process |
| GO:0006139 | nucleobase-containing compound metabolic process | biological_process |
| GO:0006725 | cellular aromatic compound metabolic process | biological_process |
| GO:1901360 | organic cyclic compound metabolic process | biological_process |
| GO:0044237 | cellular metabolic process | biological_process |
| GO:0034641 | cellular nitrogen compound metabolic process | biological_process |
| GO:0046483 | heterocycle metabolic process | biological_process |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_034298200.1 | True | 804 | mRNA | 0.42 | 2 | 11106414 | 11109555 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| si:dkey-12l12.1 | NA | coding | downstream | 126275 | 10975774 ~ 10980139 (-) |
| LOC113541360 | NA | coding | downstream | 821477 | 10284834 ~ 10284937 (-) |
| LOC113532851 | NA | coding | downstream | 1286881 | 9796334 ~ 9819533 (-) |
| mppe1 | mppe1 | coding | downstream | 1388848 | 9687555 ~ 9717566 (-) |
| elovl2 | elovl2,LOC101268971 | coding | downstream | 1534209 | 9552595 ~ 9572205 (-) |
| prlh2 | prlh | coding | upstream | 199199 | 11308754 ~ 11310736 (-) |
| zfand1 | zfand1,LOC107739158,LOC107681457,LOC107554718 | coding | upstream | 245617 | 11355172 ~ 11368763 (-) |
| si:dkey-37o8.1 | si:dkey-37o8.1,LOC108256503,LOC108434235,LOC107681461,LOC105019383,LOC103369707 | coding | upstream | 376517 | 11486072 ~ 11488628 (-) |
| myca | myc | coding | upstream | 596026 | 11705581 ~ 11708414 (-) |
| LOC113541123 | NA | coding | upstream | 636489 | 11746044 ~ 11767888 (-) |
| G330345 | NA | non-coding | downstream | 120763 | 10985030 ~ 10985651 (-) |
| G330344 | NA | non-coding | downstream | 123092 | 10982869 ~ 10983322 (-) |
| G330289 | NA | non-coding | downstream | 266862 | 10839130 ~ 10839552 (-) |
| G330287 | NA | non-coding | downstream | 270062 | 10836089 ~ 10836352 (-) |
| G330278 | NA | non-coding | downstream | 274828 | 10831371 ~ 10831586 (-) |
| G330598 | NA | non-coding | upstream | 211016 | 11320571 ~ 11321045 (-) |
| G330608 | NA | non-coding | upstream | 245113 | 11354668 ~ 11355077 (-) |
| G330610 | NA | non-coding | upstream | 260749 | 11370304 ~ 11371028 (-) |
| G330615 | LOC108256505 | non-coding | upstream | 268785 | 11378340 ~ 11381188 (-) |
| G330697 | NA | non-coding | upstream | 414755 | 11524310 ~ 11554457 (-) |
| G330379 | NA | other | downstream | 23263 | 11082268 ~ 11083151 (-) |
| ackr4b | ackr4 | other | downstream | 175639 | 10923126 ~ 10930775 (-) |
| G330185 | NA | other | downstream | 583151 | 10522732 ~ 10523263 (-) |
| LOC113541109 | NA | other | downstream | 949614 | 10151497 ~ 10156800 (-) |
| sec61b | sec61b,LOC102796100 | other | downstream | 3720067 | 7378731 ~ 7386347 (-) |
| cdv3 | cdv3 | other | upstream | 834499 | 11944054 ~ 11996700 (-) |
| LOC113541288 | NA | other | upstream | 1566990 | 12676545 ~ 12677938 (-) |
| LOC113541105 | NA | other | upstream | 2648103 | 13757658 ~ 13762615 (-) |
| LOC113541102 | msc | other | upstream | 3823440 | 14932995 ~ 14937404 (-) |
| LOC113541115 | kcnb2,si:dkey-192j17.1,LOC107657825,LOC107560266,LOC108426548,LOC107754205,LOC107589933 | other | upstream | 3853282 | 14962837 ~ 15065810 (-) |
