zgc:101716 (LOC108256737)



Basic Information


Item Value
gene id zgc:101716
gene name LOC108256737
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 6304581 ~ 6312558 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_034298203.1
TGAGCACCTGAGCTGTTCTTCAGCCACAGTCTCAGTGTCGCAGAAGAAGCAGCTCAGCTCACCCAGGCAGGCTGCAGTAAACAGAGACGGCATGAGACTTTCCTCTGCTTCAGATCATGGAAATCTTCGGGAGCACGTTTGATGATTCGGTATTTGAGGAATCGCGAAAGAGGGATTTATCTACAGATCTTCCCGCATATACACCTAAAACCTGCGATCCAGAgTGGTTTTGTCACTATGAAAAATTCGAAGACGAGCTAGATGAACAGAAAACTCTGAAGTTCCGGGCGGATCTGaaatacaggaaaaaacaaTATCAGGAAGCTCTAAAGGACTACACAGCATGCCTTCCTCTGGTGCCTAATAACAATCTGTCAATGAAAAGAGATGTGTTGGAGGGAATAGCCCGGTGCTGCAGTCATCTGGGAAAGAGCAGACAGGCCCTAGAGATCTGTGAGAAACTGAGGAACGAGGCGACCAACACGTGCCACCTGACCTGCGTCCTACAGCTGGAACAGAGCATCCACGAGGGCTGTGGAGACGTGACGAGCGGCATCTCTAGTCTGAAACAGCTTTGCTCTGTGCATCCTTTCAACCCTTGGCACTGGCTGAACCTGGCCACGAGCTACCAAAGCCTGCTGGAGTCATCCACCTCCCTCGAGGATCTGAAAGACACGCCTCAGACACCTCAGGCCTTcattcagcagcagcaggagaagAAGGAGGTGCGGCTGAAGGcgtgcatgtgttttattagaACAAGGCTGCTGATTGAAATACTGAAGATTCAGCAGTTCTCATTTGTCCTGGAAAGGAGCAAGAAAACCCTTCAGGCCATTGAGGCGTCTCTGCACAAGATGCAGCTCAAAGAGGAAACACTCCGACTCATTTCTGAGGTAATGGCGGAAGATCTGAACCCAGAGAAGATGCGTGAAGAGAACCAGGATGGTGAGGGTTTATCAGGTCTTACCATTAAGGACTTTGAGGGAAGGTGGTGGAACAAACTACATGCCTGCCTGCTGATGAAAGAGAATACAGTCTTATCAAGTGATAAGGAAATGGAGACGGGGACACCAAGGACACCAACATGAACACCAAGgattttactataaaaatggatttaaatgtttgtgtacagTGATGCAGGTTTTAATGATTTGGTGTTATGAAGAATGTTTTGGGATTTtacaaataaagattttaaatgtttacta

Function


NR:

description
uncharacterized protein C8orf76-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_034298203.1 True 1214 mRNA 0.47 6 6304581 6312558

Neighbor


gene id symbol gene type direction distance location
dpys dpys,LOC107686378 coding upstream 220327 6066133 ~ 6084254 (+)
si:dkey-122a22.2 LOC108256697 coding upstream 399164 5796162 ~ 5905417 (+)
sqlea sqle coding upstream 701568 5593849 ~ 5603013 (+)
LOC113532582 LOC108256333,LOC108440761,LOC106605545,LOC103365049,LOC105896372 coding upstream 712848 5584416 ~ 5591733 (+)
rnf144b LOC108256380,LOC108440759 coding upstream 721554 5565646 ~ 5583027 (+)
upk1a upk1a coding downstream 6529 6319087 ~ 6326360 (+)
LOC113532640 LOC108256717 coding downstream 342217 6654775 ~ 6759822 (+)
tbrg4 tbrg4 coding downstream 717223 7029781 ~ 7043670 (+)
nacad LOC108256401,LOC107579097 coding downstream 738094 7050652 ~ 7065149 (+)
rbm12ba NA coding downstream 808458 7121016 ~ 7123391 (+)
G327391 NA non-coding upstream 462143 5842219 ~ 5842438 (+)
G327385 zfpm2 non-coding upstream 471319 5832993 ~ 5833262 (+)
G327178 NA non-coding upstream 697482 5605870 ~ 5607099 (+)
G327071 NA non-coding upstream 762692 5541358 ~ 5541889 (+)
G326462 LOC108256729,LOC108426375 non-coding upstream 1274791 5019782 ~ 5029790 (+)
G328024 NA non-coding downstream 335722 6648280 ~ 6708779 (+)
G328161 NA non-coding downstream 637001 6949559 ~ 6961376 (+)
G328208 LOC108256403,LOC108426361 non-coding downstream 710597 7023155 ~ 7029401 (+)
G328222 NA non-coding downstream 732488 7045046 ~ 7045278 (+)
G328260 NA non-coding downstream 815608 7128166 ~ 7136722 (+)
G326997 NA other upstream 966330 5332268 ~ 5338251 (+)
acbd7 acbd7,LOC108256514 other upstream 989967 5311209 ~ 5314614 (+)
klf10 LOC108256604 other upstream 1315265 4984415 ~ 4989316 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other upstream 1374426 4924781 ~ 4930155 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other upstream 1380900 4920980 ~ 4923681 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132,LOC107596038 other downstream 911464 7224022 ~ 7247279 (+)
LOC113532663 NA other downstream 1588957 7901515 ~ 7902608 (+)
osr2 osr2,LOC106591507 other downstream 2060127 8372685 ~ 8378896 (+)
LOC113532774 vps13b other downstream 2075629 8388187 ~ 8550238 (+)
G329111 LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802 other downstream 2302515 8615073 ~ 8665836 (+)

Expression



Co-expression Network