LOC117595801


Basic Information

Item Value
gene id LOC117595801
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 908628 ~ 914250 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298228.1
acacacacacacacacacacacacacacgacctaCGCATTCAGTCTGGAGGATCGGGGTGTGTTGCGGCTGCGCTGGCAGCTCTGCAGATATCTCAGAGTCCTGAGTTCAACGATTCCGGCCCGTTAGAAGCACCTGGTTCTGCTGTTTAATCATGCTGCCCATCATACTTATTATGTCGATTTTATGTCAAGGTCACGCTGTTGACTACGGTACGGACTTTGTCACGGCGTTTCCAGAGAACCTTGCTTACTACTTTCCAGTAGAACTCTCCCTCAAACTGAAAATCACCACCTTTCTCCCTACCACTGATGTTACAATCATCATGAATGGTGTAATTATCAACCGAATGATCCCCGACATCCCGcaggtgtttgatgtgaatattccTGGCGCAGAGGTGAATCAATTAGGTGTCTCCAATAATTCGATCAGAATCATCAGCGACAAGAAAATCACTGTGCTTTCCATCAACAAGCGAGGAGACAGCATACAGACCAATGTTGTTCCACCTACAACACGTCTGGGAGTGGAATATCTGGTCCCTTCCCCTAATTACACCAAGCTCGCTGTCCAGCTGAACACCTATAATCCCTCCAACTTCATCGACTCGACCACTGTGCCGATGGATTTCAGTTACAGACTCATCATTATTAATGCAGAAGCGGTTGAGAACAGTGTCACAGTGACCCAAAAATTACCTGATGGGGATGAAGTTACTACGATGAAACTAGACCCTTTTGCGCTGACCCAGCTGCCAAGCAGCAGTTTCTGGTTTAAAGTCTCATCTACTGCAAAAGTGGCCGTGATCCTTACCAATCCGTGTATGGACACCCAAAATTGCAGGTGTAACATGGTTGCACACCAACTCCGACCCACTGACTTTCTGGGAACTGAATTCATCTTCCCTCCCATCAATACCACTGTCAAACACCTTTTTGTAACCTCAGCCAAACGCGTTGACCTCAGCTCTGGCTCTGAGACCAAgactgttgagcctggttccatAGGAATGCTTCCTTTTCTCCCTGGTCTAGACACCGGAAACCCAAGCCTCACAACGTCGCAGCCAGCGTCGCTCAGAGTAATCCAACCTGGCCTCATAATCGATCTGCTCCCGAAAACAATGTTTTCTGGCTGCTACTTGGTCCACAGAACGACGCAGACCCAATCTCTGGCTTTAGTCATAGTTGCAACTGGGCAAAAAAATGATGTCCGCATGGGCCCTGATCCTCTCAGTGGTGTAACCTGGAACGATATCAGTAATGCAGAATACTCATGGGCTTTAATAGACCTGGATAGATGTAAGTCATGCGTCATTTGGCATCCTACCTCGCAAATTGCAGTGTATGTCTTTGAGACTTCGTTGACGGGGGTGAGATACGGAGGTCCGGCAATTTCTGTAAACGACATTCCAGACCCCAATGGTTGTGTTGTGGTTCCCATAGAATTTGAACTTGTTAACATCACGTTGAGCTGGCAGGCGTCTCGGGCTCAATGCATCAGTAAAGGCATGGTGCTGGCGAGTCCCAACATCAActatacacaaaacaaaatggtaGCTGCACTTAACAACATGAATGCGGAAGGTGTTGCGTGGCTTGGCCTGCGACGCAGCCTTGTCAGTTCTGAGTGGTACTGGCATAGCAAGGTCGATTTCAACTTTGCCAACTGGGACAACAACCAACCAGCGAGCGGCCTGTGTGTATCCATGAGGATGGAACCGGATGGGAATTTCACGTGGAGCAGCGTGCGCTGCTGCTCGCCCATGCTGCCCCTGTGTGCCCGAGAAATGGTAATCATGGGCACCATCAACGATTTGAGTACTTACTTGCTTTAGCCAAGCACCACCACCAGTTCAGGCCCAACCACCAGCCCGTCAACCATCTAATCATCGACGACAGCTAAATTATCCTCACTTCATTTCATGCTTACGTAGTCATCGTAGTCATTGTTAAAATGCAACCTACCTGTTTAGTAGTAGAAAAATATAATTGGCTCAAACTGTTAATCAAATAACCGACAGCATCTGCTTTCATTTGCTTCAAACTTTGGGCTATAAACCATTTAACCTGAGCAACATGTATGCTAACGATGATGACACAACAGTCCATTAGCTGGATGGTACTAGTCTTATTAGCGTAGTGCATTGCTAGTGAGTTATTTTAACTCGCTATAAGAGTGCTACTCTAATAGAAATTTAAAGATTGCTGCTTGGTCACTTAATAGCTTTCGTAGCAGCTGATGCTAATACATAGCATTAGCCATTTCCGACATAGTCAGCGGGGCAGTGGACATTTCTGTTTGGACGAAGTGGATGAAATCAGATGGCATTGCATTCGACTATCTGCTGTAATATCTCTTTCAGTA

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298228.1 True 2369 mRNA 0.47 4 908628 914250

Neighbor

gene id symbol gene type direction distance location
rpp25l LOC108256289 coding upstream 1924 904463 ~ 906704 (+)
atp2c1 atp2c1,LOC107666823,LOC107592020,LOC107668304,LOC107600500 coding upstream 15026 858110 ~ 893602 (+)
cep85 cep85 coding upstream 65066 831845 ~ 843562 (+)
si:dkey-199f5.8 LOC108256292,LOC106605235,LOC108437381,LOC106582539,LOC102233588 coding upstream 92483 806641 ~ 816145 (+)
gramd1a gramd1a,LOC108256231 coding upstream 163108 719389 ~ 745520 (+)
cmtm7 cmtm7,cklf7,LOC106606093 coding downstream 8915 923165 ~ 930865 (+)
cmtm6 NA coding downstream 19904 934154 ~ 955393 (+)
LOC113525078 LOC108256274,LOC108256268,LOC108256164 coding downstream 189489 1103739 ~ 1124181 (+)
LOC117595784 LOC108256266,LOC108256164 coding downstream 224029 1138279 ~ 1166958 (+)
LOC113541446 LOC108256266 coding downstream 271270 1185520 ~ 1187361 (+)
G324216 NA non-coding upstream 155185 749451 ~ 753443 (+)
G324197 NA non-coding upstream 194827 713395 ~ 713801 (+)
G324160 NA non-coding upstream 301085 607045 ~ 607543 (+)
G324156 alkbh8 non-coding upstream 309458 598410 ~ 599170 (+)
G324125 NA non-coding upstream 319719 585179 ~ 588909 (+)
G324284 scap,LOC102785784,LOC107600505 non-coding downstream 396661 1310911 ~ 1315115 (+)
G324294 scap,LOC107666822,LOC107600505,LOC107713836 non-coding downstream 415397 1329647 ~ 1330871 (+)
G324303 NA non-coding downstream 425278 1339528 ~ 1368639 (+)
G324305 NA non-coding downstream 426875 1341125 ~ 1342780 (+)
G324328 NA non-coding downstream 464296 1378546 ~ 1378940 (+)
psmc4 psmc4,LOC107719110 other upstream 102100 774289 ~ 806528 (+)
G324206 NA other upstream 160153 745673 ~ 748475 (+)
G324123 NA other upstream 273583 567202 ~ 635045 (+)
G324161 fbl,LOC107719117,LOC107666874,LOC107737817,LOC107686016,LOC107600489 other upstream 298619 607612 ~ 610009 (+)
G324143 NA other upstream 350489 557415 ~ 558139 (+)
cpne4a cpne4a,LOC108256561,LOC108412597,LOC107600547,LOC107713817,LOC107668284,LOC107666882 other downstream 42334 956584 ~ 1010223 (+)
G324258 LOC108256270,LOC108256266,LOC108256277,LOC108256272,LOC108256164,LOC108256268 other downstream 204018 1118268 ~ 1163614 (+)
smg5 smg5,LOC107726659,LOC107671430,LOC107728478 other downstream 985376 1899626 ~ 1919710 (+)
bola1 bola1,LOC107592543 other downstream 1227942 2142192 ~ 2144525 (+)
LOC113533074 LOC108256184 other downstream 1290596 2204846 ~ 2215410 (+)

Expression


Co-expression Network