etfb (etfb,LOC107552519)


Basic Information

Item Value
gene id etfb
gene name etfb,LOC107552519
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 3968848 ~ 3978679 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298249.1
CCGGCCCCTTGTGGTGTCGCACCGATATTCCTCCGACCGCGTCCCCACACCGGTTTGTGATTCCTCAGCTAGCCGAGGGCTGCCACCATGACCGCCCGGGTTCTAGTCGGAGTCAAGCGGGTTATTGACTACGCCGTAAAGatccGAGTGAAGCCTGACAACACTGCCGTGGTTACGGATGGCGTGAAACACTCGATGAACCCTTTCTGCGAGATCGCAGTGGAGGAGGCTGTCAGGCTGAAGGAGaagaagctggtgaaggaggTTGTGGCTGTGAGCTGTGGACCTCAGCAAGTGCAGgagacCATCCGCACAGCGCTGGCTATGGGGGCAGACCGCGGCATTCACGTGGAAGTTTCCGGAAAGGACTACGAGTCTCTCGGCCCTCTGCAGGTGTCCAAGATCCTCGCCGCTTTGGCCAAGAAAGAGGAGGCTTCCCTCATCATCCTCGGGAAACAGGCTATTGACGATGACTGTAATCAGACGGGTCAGATGACGGCTGCTCTGTTGGACTGGCCCCAGGGGACCTTCGCCTCTGAGGTGACGTTGGAGGGAGATAAACTGAAAGTGGTGCGAGAGATCGACGGAGGACTGGAGACGATTAAAATCAACATGCCTGCGGTGGTGACTGCTGACCTTCGCCTCAACACACCCCGATACGCCACGCTGCCTAACATCATGAAAGCCAAGAAAAAGAAGATCGCCAACGTGAAGCCGGGAGACCTGGGAGTGGACGTGAGCTCTCGGGTGGAGGTGCTGCGGGTGGATGAGCCTCCACAGAGGCAGTCTGGGATGAAAGTGGAGTCGGTGGAGGAGCTGGTGGGCAAACTGAAGGAGGCAGGAAGGATATAAAGGCCAAGGGAGCAGGTGGAGCAGTGCGCTTAGTCACTGGGGTAAGAGCTGG

Function

symbol description
etfb Predicted to enable electron transfer activity. Predicted to be located in mitochondrial matrix. Human ortholog(s) of this gene implicated in multiple acyl-CoA dehydrogenase deficiency. Orthologous to human ETFB (electron transfer flavoprotein subunit beta).

NR:

description
electron transfer flavoprotein subunit beta-like isoform X1

GO:

id name namespace
GO:0009055 electron transfer activity molecular_function

KEGG:

id description
K03521 fixA, etfB; electron transfer flavoprotein beta subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298249.1 True 904 mRNA 0.58 6 3968848 3978679

Neighbor

gene id symbol gene type direction distance location
lim2.5 lim2,LOC102215845,LOC100699404,LOC103139272 coding downstream 17888 3945550 ~ 3950960 (-)
nek10 nek10 coding downstream 52880 3892887 ~ 3915968 (-)
efhb efhb coding downstream 256330 3701334 ~ 3712518 (-)
LOC113532763 satb1 coding downstream 296715 3616595 ~ 3672133 (-)
notchl LOC108256342 coding downstream 705934 3252693 ~ 3262914 (-)
LOC113532945 LOC108256150,LOC108442742 coding upstream 238889 4217568 ~ 4222172 (-)
LOC113532947 NA coding upstream 247281 4225960 ~ 4233987 (-)
LOC113532948 NA coding upstream 263675 4242354 ~ 4244860 (-)
LOC113532587 LOC108256689 coding upstream 272263 4250942 ~ 4256972 (-)
si:dkeyp-97a10.3 LOC108256724 coding upstream 283142 4261821 ~ 4273813 (-)
LOC113532993 NA non-coding downstream 86964 3873923 ~ 3881884 (-)
G326133 NA non-coding downstream 90331 3821905 ~ 3878517 (-)
G325780 NA non-coding downstream 731520 3209206 ~ 3237328 (-)
G325778 NA non-coding downstream 754397 3194843 ~ 3214451 (-)
G326235 NA non-coding upstream 20430 3999109 ~ 4001515 (-)
G326236 NA non-coding upstream 22939 4001618 ~ 4001825 (-)
G326488 NA non-coding upstream 83237 4061916 ~ 4076968 (-)
G326557 NA non-coding upstream 214271 4192950 ~ 4194247 (-)
G326597 NA non-coding upstream 406396 4385075 ~ 4394774 (-)
vsig10l vsig10l other downstream 2733 3957497 ~ 3966115 (-)
znf385d znf385d other downstream 172480 3720689 ~ 3796368 (-)
LOC113532799 rftn1 other downstream 564430 3319544 ~ 3404418 (-)
LOC113532533 LOC108256344 other downstream 717401 3230021 ~ 3251447 (-)
G325145 mtmr11 other downstream 1871413 2088259 ~ 2097435 (-)
LOC113532858 LOC103367052,LOC107379323,LOC101466533,LOC100706402,LOC103139281,LOC108413244,LOC102311978,LOC103477771,LOC567622 other upstream 329927 4308606 ~ 4347253 (-)
ubr5 ubr5 other upstream 953476 4932155 ~ 4977527 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other upstream 1850795 5829474 ~ 5978379 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other upstream 2277724 6256403 ~ 6383588 (-)
G328342 LOC108256401 other upstream 3078115 7056794 ~ 7062428 (-)

Expression


Co-expression Network