dpy19l1l (dpy19l1)


Basic Information

Item Value
gene id dpy19l1l
gene name dpy19l1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 333684 ~ 350549 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298255.1
ACAGTGCTAACAGTCTCTCAGAGCGGCTCAGtgtctcagagctgctgctgaggCGCTGCGTAATTTCTGctgctttttaatttattggtttttattttttgtaaatgttcgGTAGGTTTAGAATGAAAAGATGGTAGTTAAAGCAAGAAAAGCGGGCGCGAAGGAGCAGAATGAGCGGAGTGAAGGGAAGAGccggagagggagagaggggaagaGCGCGCAGCTGCACGGTAGAAACGCCGCCATCATCCGCCACAAGCTCGGCCTGAGCGCGACTCCCACACCGCCgccgctcctcctcctcctcctcagagCGCTCTTCATCTGCGCCCTCGCTCTTACTGCAGGATTTCTCCACTGGTATCACCTCTCCGAGCTGTTTGAGAACGACCGTCACTTCTCCCACATGTCCTCTCTGGAGAAGGAGATGGCCTTCAGAACCGAAATGgGTCTGTATTACTCGTACTTTAAGAGCATCATCGAGGCTCCGTCCTTCCTGAACGGTCTCGGGCTGATCATGAGCGACCGTCTCACCGAGTATCCGCTGGTCATAAACACGCTGAAGAGGTTTAACCTGTACCCCGAGGTGGTGTTGGCCAGCTGGTACCGTGTTTACTCCACCACTATGGAGTTCTTCAGGATTCCCACTAAGATGTGCTGGACCATCAATAGAGGAGAAGATCTGGATCCTGTGGAGAGCTGTGAAGgtatGGGAGATCCTGCGTACTTCTACGTGACTTTTGTTTTCCTCTTAAATGGAGCCATGATGAGCCTCTTTTACATCTACGGAACCTACCTGAGCGGCAGTAAGATGGGAGGAGCGGTCACAGTGCTGTCCTTCTTTTTTAACCACGGAGAGaGCACGCGGGTGATGTGGACTCCTCCACTCAGAGAGAGTTTCTCGTATCCCTTCCTGGTTCTGCAGATgctcctcctcacacacatccTCAGGACGAAGGACCCGAGCAGGAACAGCATGGTGGCGCTGGGCGTGtccactgtcatgttcatgttgcCGTGGCAATTTGCCCAGTTTGTCTTACTCACACAGgtgGCGTCTCTGTTTGCGTCCTACATCCTGGGTTACCTGAGTCCGGCTAAGATGCAGGCCCTACTGCTCACACACATGGTgtctctgggtgtgtgtttcaTCCTCATGTTCGGTAACTCCATGTTACTGACGTCCTTCTACGCCTCCTCCCTCATCTCCATCTGggCTGTAGTTGCTCTGAGGAATCAATTTGCGCAGATGTTCAGAGCCGGATTCCTCACATGGGTGATGCAGTGTGTGGCGTGGGGCGGGACTACAGTCATCCTCAAGTTCCTGCTAGCGCTGGTACTCGGGGCGTCGGATGATGCTCACATCAGCAGTCTGATCAAGTCCAAGTTCACCAGCTACAAGGACTTTGATACGATGATGTACACCTGCGCAGCTGAGTTCGACTTCATGGAGGTGGAGACGGTTCTGCGCTACGTTAAAACCCTGCTGCTGCCCGTGAACCTGCTGGTGGTTGGTGTTATTGCTGTAAAGATTATAAAGGACGTGATCGCGTTCCTCAGACGCCGGGACGGCGCCGAGCACGAGGACGATCAGACGGAGAAGTTGGCTAAGGCAGTGttggTGTATCACACTCTGCAGTTGGTAGCCTTTGCTGTTCTGGCTGTTCTCATCATGAGGCTGAAACTCTTCCTCACTCCACACATGTGCCTGATGACCTCACTGCTCTGCTCCAGACAGctgttcgGCTGGGTGGGTGAGAAAATGAAGCAGCACACTGCCGTGTTTATTATCGTGTCCATCATGGCGGTTCAGGGCGTGGCCAACCTGCAGCAGCAGTGGAGCATCATGGGAGAATTCAGCAACCTGCCACAGGAAGACCTGCTGGAGTGGATCAAAGAGAACACACCACcgaatgcagTGTTTGCCGGTGCGATGCCCACCATGGCGAGTGTGAAGCTGTCAGCAGGCAGAGCCATCGTTAATCACCCGCACTACGAAGACGCAGGACTCAGggagagGACAAAGCTGGTTTATTCCATGTACAGCCGGAAATCAGCCGAGCAGGTGAAGAGGAACCTGATGAGTTTGCAGGTGGATTATTTCATCCTTGAGGATTCATGGTGCACGAGAcgaaccaggccaGGCTGCAGCATGCCGGAGATCTGGGATGTGGAGGATCCGGTGAATGCGGGTAAAACTCCGGTGTGTACGCTGCTGAGTCGAGACGCGCGTCCTCACTTCACCACCGTCTTCCACAACAACGTCTACAAAGTGCTCAAAGTCCCCAAAGCAGCGAAACACACCAGATAACCACacgatggagtgtgtgtgtgtgtgtgtgtgtgtaagtgtagcTGGGGTTTATCTAGAAACCGTTCATTGCCAagacccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagacttcTCAGCTGTGAGTATTTATTCATAAGGAACGTTGTTGCTGCTGTTCATCAGATCCGTATCTTCAGGAGGAAACGGTTTAAAGATcgaattttttattctttggtGTGAAATCAGGAGCGACTCgtaaacacagtgtttatttttactctcaTTGTCTTAAACCTGAAGTCCTTAAAGTGTACCGTTGCACAGCGTTTTATCAGATAAAgcggtctttttttttttttttttattaacggAAGTCTGCGCTTGCTGCTTCCTGTTTCATAACcgttcagtgttatttttttccctcacttcctgtctgtgatGCGGTTCGCTGAGTCTCTGCATCTTCAGCATCGTGTTGGACTTTTTTCAGACTTGGGAAACATGAAACACGACGTTATCTTCAGGTGaatttcccataatgcactgtgacATGAGAAACTGTGTCTGGGTCATCTTCATCTTACTGCATGACTGCTCTCGTCCtgcagtgcatcatgggaaatTTCACTTCTGGTAGATCGAATCAGGGGCTGAATTCTAAAAATCTAACTTTGAAGTCTTTAAAATTTgtaattcataaaatatttcagtttttagcTCTAAAATCAGCTCCTAAAGCTCTTCTCCAGAGCGCTAATGTACTTTATGAATTAttcttacacacaaaaaaatgacttttatttgaccatttttctTAATTCAGCTGTTAGGAGCTACTTTACGCTTCTCGATTAAAGGCCATGATTAttataagaatttaaaaaaaatttcctctCAGCTGATTTCAtaaaatttgtgaaaaatgtgatttttgtgaACGTCGCCCCCTGATCTGAATCTTACACAatttcccatgatgcactgtGATTAAAAATCTTCTCTACACACAAACCACACGTTTCATCTCCTGGCCTCAGTTTGACTGTTTTTATTCTTAATTCTTTATGTAACGATGCTGCAgattgactctttttttttttgctgcatttctttaatttttttattctgactgTAAAAGAATTGAACTTGAGATCAGTGAGATGTGGAAATTATGAAGCAAAAAAATTCCGAGtggaaaatgtggaaaaaaaactgtaaagtgTGTCACATTTTTCCTGATGGCCGAATCCAACGGTATTTTATGAATAAAgttatttgtaattttgca

Function

symbol description
dpy19l1 Predicted to enable mannosyltransferase activity. Predicted to be involved in protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan. Located in membrane.

NR:

description
probable C-mannosyltransferase DPY19L1 isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K24553 DPY19L; C-mannosyltransferase DPY19L

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298255.1 True 3608 mRNA 0.48 22 333684 350549

Neighbor

gene id symbol gene type direction distance location
zgc:114181 LOC108261199 coding upstream 102190 222517 ~ 231494 (+)
ethe1 ethe1,LOC106582613,LOC106605166 coding upstream 218538 108218 ~ 115146 (+)
LOC113525556 LOC108278024 coding upstream 225886 96799 ~ 107798 (+)
xrcc1 xrcc1,LOC107565304,LOC107737754 coding upstream 237956 77198 ~ 95728 (+)
LOC113525566 LOC108278025 coding upstream 265685 63577 ~ 67999 (+)
LOC117595771 NA coding downstream 104967 455516 ~ 456979 (+)
LOC113524801 NA coding downstream 109664 460213 ~ 466623 (+)
ppox ppox coding downstream 119407 469956 ~ 483298 (+)
zgc:162160 LOC108256255,LOC108437392,LOC107719116,LOC107666762,LOC107737835,LOC107592933 coding downstream 154765 505314 ~ 524157 (+)
etsrp LOC108256243 coding downstream 300369 650918 ~ 657392 (+)
G324082 NA non-coding upstream 883 331923 ~ 332801 (+)
LOC113523709 NA non-coding upstream 98853 233614 ~ 234831 (+)
G324060 NA non-coding upstream 114585 218832 ~ 219099 (+)
G324039 LOC108256235 non-coding upstream 182694 116967 ~ 150990 (+)
G324045 NA non-coding upstream 194823 137101 ~ 138861 (+)
G324089 NA non-coding downstream 8574 359123 ~ 361065 (+)
G324083 NA non-coding downstream 14939 365488 ~ 437810 (+)
G324116 smarcc1 non-coding downstream 94228 444777 ~ 446125 (+)
G324139 NA non-coding downstream 193319 543868 ~ 548283 (+)
G324140 LOC106578455,LOC103388722 non-coding downstream 202174 552723 ~ 557118 (+)
tbx20 tbx20,LOC107600539,LOC107719124,LOC107592953,LOC107666841 other upstream 5745 240370 ~ 327939 (+)
G324068 NA other upstream 41096 241197 ~ 292588 (+)
cmc1 cmc1 other upstream 139839 182467 ~ 193845 (+)
nod1 nod1 other upstream 297912 25296 ~ 35772 (+)
G324020 NA other upstream 310474 22297 ~ 23210 (+)
G324067 NA other downstream 4232 354781 ~ 412109 (+)
G324085 NA other downstream 87842 438391 ~ 442287 (+)
G324120 NA other downstream 104361 454910 ~ 466625 (+)
G324143 NA other downstream 206866 557415 ~ 558139 (+)
G324123 NA other downstream 216653 567202 ~ 635045 (+)

Expression


Co-expression Network