si:ch73-173p19.2 (LOC108256301)


Basic Information

Item Value
gene id si:ch73-173p19.2
gene name LOC108256301
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 15251635 ~ 15265895 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298261.1
TCACCAAAAATTGAATCATTTAGTGCAAATTCAAGTGAAGAGATGCATGTGTGTACTAACAAAGCTCATCttcttttaaattataaatagaaCAAGTGAATTATTTGAATCACACCCAATGAATCAGTAGATACATCAAATACTGAATCATTACCTTTAGCAAACGATCACTTCATAAGTGATTCGAGAATAGATTTGATCACATTGTTGTCTTGGTATCTTAGCTACAGGACCTCAGCAATGGTTGTGTCACTATTAATGAATGTCTCTATTGATCAGTGTCCGTATCGATCAGGGTTTTAATTGATTGTCTGTATCGATTGAAACACACAATATTCTAAAAtctctcatctcacacacacatttaaaacacagactgagagaagtgAGTAGGAACTGAGTGTCTGAAGGCGGATAGTGCACTTTTattgtgaattttttaaaagttgaagTTAAAAGCAGCAGCAGTATGGGTTTGCTATTCCGCAGTGAGGAGATGTGTTTACTGCAGCTCTTCTTTCAAACCGAATCAGCACTCAGCTGTATTAATGAGCTTGGCCTTCTGGGACTTGTCGAGTTCAGAGATctAAACCCAGAAATGAGTTTGTCTCAGAGGAGATTTGTAAACGAGGTGAAGAAGTGTGAGGAAATCGAGAGAATCATCAAGTTTTTGGAAGGTGAAATATTGCGATGTAATATTCCTATCGCTACTGGATCACACAGCAAAGAAACTCAGTGTAGCAGAGACACACTGGAGCTTGAGtgtgaggtAAAAGAACTGGAACAGGAGCTGAAGGAGATCAACTGTAATCAAACAACACTGAAGAGGAATCTGACAGAGCTGCTAGAGATCAGTGCACTGCTCGGCGTCATCCATGACTTCTTccaggagGCTGAGATGCAGCTGTCCTGCACTGATCTTCAGTCTGACGGACCGGACATCGCTCATCGCCGAAACAGCATCAGCACCATCACAGCTCCTAAactgagGTTTATTGCCGGTGTGATTAAACACGATCGGTTTCCTGCATTTGAGAAAGTCCTGTGGCGTCTTTTTCATGAGAATTTTCTGCTGCGCCGTGCAGAGATTCAACAGCAACCAGAGAACAGCATAGTGAAGAAAGACGCCTTCATTATCTGTGTGCAGGGTGAGAAGGTGCAgggaaaaatcagaaaaatatgCGAAGGGTTTAGTGTCAGTTTGTGCCCGTGCCCGAACACTTTACACGCCCAAGAGGAGATGAAGTGTAACATACAGACACGCATCAAAGAACTGCAAATGATTTTGCACCAGTGTGAAGAATTCTGCACTGCAGTTTTGAATAAAGCAGCAAACAGAGTTACAGACTGGTCCATCCAAGTGCACAAGATGAAGTCCATCTATCACACACTCAACCTGTGCAACATCGAtatcacacacagactcaccaTCGCAGAGATATGGTGTCCGGTGTTAGATCTCGGCCATGTCCAGCGTGCGCTCACTAAAGCTGCTgagcaCGCTGGTTCCAGTGTCAGACCTGTCCTAAATCGCATCCAGAGCCATGATACGCCACCCACATATAACAGGATGAACCGTTTCACTGCAGGCTTTCAGCAGATTGTCGATACATACGGTGTGAACAGTTATCAGGAGATTAATCCAGCTCCATATACCATGGTGACGTTCCCGTTTCTGTTCGCTGTAATGTTCGGTGACTGTGGTCACGGACTCATAATGACGTTGATTGCTGGCTGGATCATCATGAATGAGCAGAAATTAAACCAGCAGAAGAATGAGATCGTGTCCATGCTGGTGGGCGGGCGCTACATCGTCCTGCTGATGGGCCTTTTCTCCATCTACACTGGTCTCATTTATAATGACTGCTTCTCCAAATCCTTCAACATCTTCGGCTCGTCATGGAGCGTCAGAGCCATGTTCTGGCCCAGTGGACCCTGGAATAATCAAACCCTGCACAGTTCGAATCATCTCCATTTGGACCCTGCAGTGCCAGGAGTTTACTCTGGAACTCCGTACATGCTTGGCATCGACCCAGTGTGGAATATTGCATCAAATAAGCTCTCCTTCCTAAACTCCTATAAGATGAAGATGGCAGTTATAATTGGAGTTTGTCACATGACCTTCGGTCTGACGCTCAGTGTAGTCAACTACATACATTTCAGAAATGTCCAAAACGTTTTGCTGCGCTTCGTGCCAGAGCTCATCttcttgctgtctctcttcGGTTATCTCgtcttcctcatcctcttcaaGTGGTGCATGGGCGTGCAGTGTGACAGCAGTatcctcctcatcttcatcaACATGATGTTTTTCAACTATCAGGCTGACGAGAAATTCATCTACAGTGGACAGAAAGCTGTGCAGATATTCCTGGTGGTCCAGGCTCTGCTCATGGTCCCTATAATGCTGCTAATAAAACCCCTGCTCACTTACAGAAGGCAAGAGAAGATCACAGACCAGGTCAGTCTGAGtgacgtgtttgtgtgtgaagcGATCCACACTATAGAACACTGCCTCGGCTGCGTCTCCAATACAGCGTCTTATCTGCGGCTGTGGGCTCTCAGCCTCGCCCACTCAgagTTATCTGAGGTGTTATGGCGGATGCTGATGTGCATCGCTCTGCGCTCTGGTTCATCGCTCATGCTCACGCTGATCTTCTGCTGCTTTGTGTTGCTAAGTGTGTCAGTCCTAATAGTCATGGAGGGACTGTCTGCATTCCTGCATGCTCTACGTCTGCACTGGGTAGAATTTCAGAGCAAGTTTTATAAAGGAGCCGGATTTAAATTTACACCGTTGTCCTTCAAGTCTAAAGAAACACAGCAATGGTAAAGTATTAAATTTGATAACAATAATGAAATTGTCAGTGTACACATAtgtaacacatacagtatattacaataatgtattacattaatatatgaTACATTAACCCAAAGAGCCTGAATACAACAACATGTGTACTGTATAACTCTTTACTCTAACAAGTAACTGTAGTAACCTTGATGGCAGGGTGTATGCAGATGTTAGCAAAGCTAGACGCTTAGTTCTGCTTTCCTGTGGATTGTATACAGTAGCTGTAGAGAACAATAAAtagtatttctctttttcttttaaataaaagtaaatgtgttaaatgctAAACAgtggaaatgtaaatgaatgtcaGCTGCATGTACACTGCTTATTAgttcaataaaatattacttCTCTGTG
>XR_004576981.1
TTCACCAAAAATTGAATCATTTAGTGCAAATTCAAGTGAAGAGATGCATGTGTGTACTAACAAAGCTCATCttcttttaaattataaatagaaCAAGTGAATTATTTGAATCACACCCAATGAATCAGTAGATACATCAAATACTGAATCATTACCTTTAGCAAACGATCACTTCATAAGTGATTCGAGAATAGATTTGATCACATTGTTGTCTTGGTATCTTAGCTACAGGACCTCAGCAATGGTTGTGTCACTATTAATGAATGTCTCTATTGATCAGTGTCCGTATCGATCAGGGTTTTAATTGATTGTCTGTATCGATTGAAACACACAATATTCTAAAAtctctcatctcacacacacatttaaaacacagactgagagaagtgAGTAGGAACTGAGTGTCTGAAGGCGGATAGTGCACTTTTattgtgaattttttaaaagttgaagTTAAAAGCAGCAGCAGTATGGGTTTGCTATTCCGCAGTGAGGAGATGTGTTTACTGCAGCTCTTCTTTCAAACCGAATCAGCACTCAGCTGTATTAATGAGCTTGGCCTTCTGGGACTTGTCGAGTTCAGAGATctAAACCCAGAAATGAGTTTGTCTCAGAGGAGATTTGTAAACGAGGTGAAGAAGTGTGAGGAAATCGAGAGAATCATCAAGTTTTTGGAAGGTGAAATATTGCGATGTAATATTCCTATCGCTACTGGATCACACAGCAAAGAAACTCAGTGTAGCAGAGACACACTGGAGCTTGAGtgtgaggtAAAAGAACTGGAACAGGAGCTGAAGGAGATCAACTGTAATCAAACAACACTGAAGAGGAATCTGACAGAGCTGCTAGAGATCAGTGCACTGCTCGGCGTCATCCATGACTTCTTccaggagGCTGAGATGCAGCTGTCCTGCACTGATCTTCAGTCTGACGGACCGGACATCGCTCATCGCCGAAACAGCATCAGCACCATCACAGCTCCTAAactgagGTTTATTGCCGGTGTGATTAAACACGATCGGTTTCCTGCATTTGAGAAAGTCCTGTGGCGTCTTTTTCATGAGAATTTTCTGCTGCGCCGTGCAGAGATTCAACAGCAACCAGAGAACAGCATAGTGAAGAAAGACGCCTTCATTATCTGTGTGCAGGGTGAGAAGGTGCAgggaaaaatcagaaaaatatgCGAAGGGTTTAGTGTCAGTTTGTGCCCGTGCCCGAACACTTTACACGCCCAAGAGGAGATGAAGTGTAACATACAGACACGCATCAAAGAACTGCAAATGATTTTGCACCAGTGTGAAGAATTCTGCACTGCAGTTTTGAATAAAGCAGCAAACAGAGTTACAGACTGGTCCATCCAAGTGCACAAGATGAAGTCCATCTATCACACACTCAACCTGTGCAACATCGAtatcacacacagactcaccaTCGCAGAGATATGGTGTCCGGTGTTAGATCTCGGCCATGTCCAGCGTGCGCTCACTAAAGCTGCTgagcaCGCTGGTTCCAGTGTCAGACCTGTCCTAAATCGCATCCAGAGCCATGATACGCCACCCACATATAACAGGATGAACCGTTTCACTGCAGGCTTTCAGCAGATTGTCGATACATACGGTGTGAACAGTTATCAGGAGATTAATCCAGCTCCATATACCATGGTGACGTTCCCGTTTCTGTTCGCTGTAATGTTCGGTGACTGTGGTCACGGACTCATAATGACGTTGATTGCTGGCTGGATCATCATGAATGAGCAGAAATTAAACCAGCAGAAGAATGAGATCGTGTCCATGCTGGTGGGCGGGCGCTACATCGTCCTGCTGATGGGCCTTTTCTCCATCTACACTGGTCTCATTTATAATGACTGCTTCTCCAAATCCTTCAACATCTTCGGCTCGTCATGGAGCGTCAGAGCCATGTTCTGGCCCAGTGGACCCTGGAATAATCAAACCCTGCACAGTTCGAATCATCTCCATTTGGACCCTGCAGTGCCAGGAGTTTACTCTGGAACTCCGTACATGCTTGGCATCGACCCAGTGTGGAATATTGCATCAAATAAGCTCTCCTTCCTAAACTCCTATAAGATGAAGATGGCAGTTATAATTGGAGTTTGTCACATGACCTTCGGTCTGACGCTCAGTGTAGTCAACTACATACATTTCAGAAATGTCCAAAACGTTTTGCTGCGCTTCGTGCCAGAGCTCATCttcttgctgtctctcttcGGTTATCTCgtcttcctcatcctcttcaaGTGGTGCATGGGCGTGCAGTGTGACAGCAGTatcctcctcatcttcatcaACATGATGTTTTTCAACTATCAGGCTGACGAGAAATTCATCTACAGTGGACAGCTGTGCAGATATTCCTGGTGGTCCAGGCTCTGCTCATGGTCCCTATAATGCTGCTAATAAAACCCCTGCTCACTTACAGAAGGCAAGAGAAGATCACAGACCAGGTCAGTCTGAGtgacgtgtttgtgtgtgaagcGATCCACACTATAGAACACTGCCTCGGCTGCGTCTCCAATACAGCGTCTTATCTGCGGCTGTGGGCTCTCAGCCTCGCCCACTCAg

Function

NR:

description
PREDICTED: V-type proton ATPase 116 kDa subunit a-like

GO:

id name namespace
GO:0071466 cellular response to xenobiotic stimulus biological_process

KEGG:

id description
K02123 ATPVI, ntpI, atpI; V/A-type H+/Na+-transporting ATPase subunit I

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298261.1 True 3217 mRNA 0.43 19 15251636 15265895
XR_004576981.1 False 2579 misc_RNA 0.45 17 15251635 15264587

Neighbor

gene id symbol gene type direction distance location
flj11011l ube2w,LOC103354920,LOC107725703,LOC106591739,LOC107754202 coding upstream 122032 15121226 ~ 15129603 (+)
trpa1b trpa1 coding upstream 141321 15084521 ~ 15110314 (+)
eya1 eya1,LOC107657823 coding upstream 403551 14796644 ~ 14848084 (+)
xkr9 xkr9 coding upstream 530058 14714795 ~ 14721577 (+)
pabpn1 pabpn1,LOC108256547,LOC107758815,LOC107589928,LOC107596039 coding upstream 674392 14565792 ~ 14577243 (+)
si:ch73-173p19.1 LOC108256550 coding downstream 117091 15382986 ~ 15397527 (+)
tpk1 tpk1 coding downstream 321407 15587302 ~ 15614891 (+)
panx1a panx1 coding downstream 354253 15620148 ~ 15629965 (+)
hephl1a LOC108256642 coding downstream 810996 16076891 ~ 16096771 (+)
LOC113541322 NA coding downstream 934601 16200496 ~ 16219013 (+)
G332348 NA non-coding upstream 49330 15201817 ~ 15202305 (+)
G332334 NA non-coding upstream 138121 15065975 ~ 15113514 (+)
G332248 NA non-coding upstream 295568 14955860 ~ 14956067 (+)
G332238 NA non-coding upstream 306423 14944991 ~ 14945212 (+)
G332111 NA non-coding upstream 548365 14688163 ~ 14703270 (+)
G332527 NA non-coding downstream 62719 15328614 ~ 15332432 (+)
LOC113541145 NA non-coding downstream 147977 15413872 ~ 15418923 (+)
LOC113541248 NA non-coding downstream 304968 15570863 ~ 15579798 (+)
G332650 NA non-coding downstream 326193 15592088 ~ 15617234 (+)
G332788 NA non-coding downstream 775489 16041384 ~ 16041587 (+)
G331476 NA other upstream 1993219 13257894 ~ 13258416 (+)
G331263 LOC108256200,LOC100304628 other upstream 2538957 12706939 ~ 12712678 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other upstream 3094848 12062332 ~ 12156787 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other upstream 3503076 11717415 ~ 11748559 (+)
G330257 NA other upstream 4276720 10973264 ~ 10974915 (+)
G332636 NA other downstream 300280 15566175 ~ 15566663 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 1834269 17100164 ~ 17110027 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other downstream 2019187 17285082 ~ 17302004 (+)
rnf6 rnf6,LOC106590444 other downstream 2270049 17535944 ~ 17542387 (+)
pan3 pan3,LOC107705213 other downstream 2495636 17761531 ~ 17796521 (+)

Expression


Co-expression Network