LOC117595804


Basic Information

Item Value
gene id LOC117595804
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 15267358 ~ 15269264 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298262.1
GAGACCAGCTTGCACACGATGAACGAGTTTTACTCCTCTGTGGACAAGAAGCTGAAAGTCGATGACACAAGACTGAAAGCTCTGGAAAACTCCATTAAGAAAATCGTGGACAAAAACAGAGACCTTCTGCCACGGCCATGGGAATTCTCGGAGACCATCACTCTGGATCAGAATAAAAATCAAGGCAATGTCCAGATCTCAGAGGACAAGATGGAGATGTCAGTGAGCCCTTCAGACTGTCTGGGCCTTACTGCTCGCTCGTCATGGTGCACCATGCGGGCGTCTCAGAGCTTCAGTGAAGGCCTGCATTACTGGGAGGTGGCAGTAGGAGGCTGTGAGAGCTGGGCGGTGGGCATAGCGGAACAAAGCCGGGTTAGAGGCATCCAAACTCAGGCTGCGAGCCAGGAAAAGAATTTGTGGATTCTGGAGTGCGATGGTGGTGAGCTCTCAGTGCTGCACAACAACGACTTCAGCAGGGTCAAGGAGAACAATATTCAAACCCTTGGCGTCTTCCTGGATTGGAGTAAAGGGCGACTGAAGTTCTACAATGTCAATACAGGCAACATCCTGCACTCATTTATTGCCCAGTTCAAGCACGCCGTTTATCCCACGTTCCGCATTCGTGCACAGAAAGACAGTGTGGCACGGCTGAAGATCTGCAACCTGATGCACCAAGATGAAGGGCACTACGACAGCGTCAGTACCTCCGTAATCTCAGAGATGCCAATTGAGGAGGCTATGGAGTTGTCTTCTGAGGGCTCACATTAggacatgattttaaaaatgttaacatgtgTAACAATGCTaacatgcatatttattttaactactgtctatttattaaaatgcagtgtTATGAAGGAAGAGTTAATGACATTTATTAGTAAATCCTGTTTATTTGTGTAGACCACTGTACAAATGttgctgttttattaaatgtttgaatAATGTCTCAACAGACTATGgctcattttcttgttttattggtGTTTAAAGCTctttttaggatttttcttctcctttaaATCCTTAAAAGCTTTAAATCAAGTGGTACTCTAAGTGCTCCTTGTGTTTTTAGAACAaatcaatatgtgtgtgtgtgtgtgtgtgtactgtatacagTGGATTCAGacagtattcagacccctttacttgttacacattttgtgttgtggatttgattttgaatggaTATAATTGCTATTCTTACCCATCAATCTACACTTAATAGCCCATAATGATGAtgtgaaaacatatttttagagattttcaaaaattaattaacaatcaGTCTTCCCAGGAGTGCGTGTCtgaccatttaatgctcagagatataaagaaaaacccaaaagctacatcatgtgacctctaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298262.1 True 1373 mRNA 0.42 3 15267358 15269264

Neighbor

gene id symbol gene type direction distance location
rdh10a rdh10a,rdh10,LOC108256305,LOC107560263,LOC107725699,LOC107754204,LOC107657826,LOC107696016 coding downstream 22333 15229216 ~ 15245025 (-)
dcaf11 dcaf11 coding downstream 146440 15111698 ~ 15120918 (-)
terf1 terf1 coding downstream 312679 14945659 ~ 14954679 (-)
tram1 tram1,LOC107657822 coding downstream 556536 14702024 ~ 14710822 (-)
ncoa2 ncoa2 coding downstream 571750 14635686 ~ 14695608 (-)
LOC117595763 LOC108256304 coding upstream 3862 15273126 ~ 15275076 (-)
LOC113541332 NA coding upstream 7319 15276583 ~ 15284155 (-)
LOC117595668 NA coding upstream 16244 15285508 ~ 15288765 (-)
LOC113541204 LOC108256300 coding upstream 68115 15337379 ~ 15380275 (-)
LOC113541141 LOC108256549 coding upstream 129017 15398281 ~ 15414443 (-)
G332196 NA non-coding downstream 470160 14714217 ~ 14797198 (-)
G332164 NA non-coding downstream 632432 14544032 ~ 14634926 (-)
G332147 NA non-coding downstream 702654 14537252 ~ 14564704 (-)
G332169 NA non-coding downstream 744743 14513735 ~ 14522615 (-)
G332056 NA non-coding downstream 800745 14466394 ~ 14466613 (-)
G332580 NA non-coding upstream 76008 15345272 ~ 15397132 (-)
G332637 NA non-coding upstream 296923 15566187 ~ 15566646 (-)
G332676 NA non-coding upstream 351242 15620506 ~ 15620717 (-)
G332682 NA non-coding upstream 360959 15630223 ~ 15630444 (-)
LOC113541266 NA non-coding upstream 666564 15935828 ~ 15943189 (-)
LOC113541115 kcnb2,si:dkey-192j17.1,LOC107657825,LOC107560266,LOC108426548,LOC107754205,LOC107589933 other downstream 201548 14962837 ~ 15065810 (-)
LOC113541102 msc other downstream 329954 14932995 ~ 14937404 (-)
LOC113541105 NA other downstream 1504743 13757658 ~ 13762615 (-)
LOC113541288 NA other downstream 2589420 12676545 ~ 12677938 (-)
cdv3 cdv3 other downstream 3270658 11944054 ~ 11996700 (-)
sec61g NA other upstream 346234 15615498 ~ 15618842 (-)
cpa6 cpa6,LOC106579545 other upstream 1012007 16281271 ~ 16312916 (-)
oxsr1b oxsr1,oxsr1b other upstream 1560526 16829790 ~ 16879884 (-)
myd88 myd88 other upstream 1615887 16885151 ~ 16889424 (-)
zbtb47b zbtb47,znf652,LOC108256615 other upstream 1846834 17116098 ~ 17139685 (-)

Expression


Co-expression Network