mtmr6 (mtmr6,LOC107721921,LOC107705267,LOC107590218)


Basic Information

Item Value
gene id mtmr6
gene name mtmr6,LOC107721921,LOC107705267,LOC107590218
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19579310 ~ 19593452 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298283.1
CAGttgggaaagaaaaaacaaacccaaacagcgGTTGAGCAACATCAGAAACAGAGATTATTCATTGGGTGTTGCTTTTTTAGAGAGCAGGTGAAATTTCATTGCTTTTTTCATGTGCGATCTTATCTGTTTACAGCATCTTTTGCTTCTTAATACgtgattaaaaacaacaacaacaacaacatcaacagcaCCACAGTGGGCTGATGGAGCACATAAGGACCCCGAAGgtGGAGCAGGTGAAGCTTGTGGATCGCTTCAGCAACAAGTCGACGACAGGAACGCTGTACCTGACCGCCTCACACCTCATCTTTGTGGACAGTAACACGGCCAGCGCTCAGGAGATATGGATTCTTCACCACCACATCGCGTCTGTAGAGAAGCTCTCTCTGACCGCTGGCGGCTGCCCGCTCCTCATCCAGTGCCGCAATTTCCGGGTCGTTCACTTTGTGATCCCGCGTGAGAGAGACTGCCACGACGTCTACAGCTCGCTGCTCCGGCTGCTCCGGCCAGtgtcgTACGACGAGCTCTACGCGTTCTCCTACAACCCGAAGCAGAACGAGCAGCAGAGGGAGGAGGGCTGGCAGCTGATTGACCTGGGGGCGGAGTTTGAGCGTATGGGTGTACCATGTGACCAGTGGCAGCTGACGGACGTTAACAGAGACTACAAGgtgtgtgagaCGTACCCCAGAGACCTGTATGTTCCCATCACGGCCAGTAAACCCATCATCGTGGGAAGCTCCAAGTTCAGGAGTAAAGGCCGCTTCCCCGTCCTGACCTACTTTTACCAGGAAAAGAAGgctgCAGTGTGTCGATGCAGTCAGCCACTCTCAGGCTTCAGTGCTCGCTGTCTGGAGGATGAACACATGCTGCAGTCCATCAGCAAAGCCAACCACAACAACCGCTTCGTTTATGTCATGGACACCAGGCctaagTTAAACGCACTGGCCAATCGGGCGGCGGGGAAAGGCTACGAGAACGAGGACAACTACTCCAACATCCGCTTCCAGTTCGTGGGCATCGAGAACATCCACGTGATGAGAGCCAGCCTACAGAAACTTCTGGAAGtggttGGTACTCGTGGTCTCTCCGTGACCGAGTTCCTGGTAGGACTTGAAAGCAGCGGCTGGTTGCGTCACATCAAAGCGATTGTTGATGCTGCCATCTTCCTCACAAAGGCGGTGACTGTAGAGGGCGCCAGTGTGCTGGTTCACTGCTCCGACGGCTGGGATCGCACGGCTCAGGTCTGCTCGCTGGGCGCACTGCTCATGGACCCTTACTACCGCACCATCAAAGGCTTCATGGTGCTGATCGAGAAAGACTGGATCTCCTTCGGACACAAGTTcgcagacagGTGCGACCAGTTGGATGGCGACCCGAAGGAGGTATCTCCCATCTTCACGCAGTTCCTGGAGAGTGTGTGGCAGCTGACGGAGCAGTTCCCGCAGGCCTTCCAGTTCAGCGAGTGGTTCCTCATCCAGATCCACGAGCACGTGCACTCGTGTCAGTTCGGAAACTTCCTGGGGAACAACCAGCGGCAGAGAGAGGAgctgcagttaAAAGAGAGGACGTACTCCTTGTGGGCTCATCTGTTAAGCGAGCAGCAGAACTTCCTCAACCCTTTGTACAGCCCGAGTTTCGCAGAATCACACCCGGTTCTGGAACCTTCCACACAGTCCTGGAACTTTAAGTTTTGGAGAAACATGTACCACCAGTTTGACCGCTCCATGCATCCACGCCAGTCGATCCTCAAACACACTCTCGCGCTTAAAGAAAGCAACAAGGAACTGGAGAACACGGTGCGAGGGCTGCAAGAGAAGCTGCAGAAGTTTGGAGTAAGCACGTCTCCTCTGAACCACCAGAAGGAGCGCAGTATTCCTTCTCGGCCGCGGTCTCTCATCCTCGGAGCTCCGGTCAGCCGAAAGGAGGCGCAGCAGGACgaagacgaggaggaggagattTATGGAGAAGAGGCGCTGGAGGAAGAGGACGACGTCCCACCCAGCAGCAGCGGAGAACGGACAGTAGAGGGCAGCAGTGCCTCAGACAACGGCTACACGGAGCTGCAAGGCTCGTTCGGCTCCAAGAGCGAGCCGGCTGTCGTCAGTCTGGAGTTCGGAGTGGCCCGAATGACCTGCTGAGGCTCGCTGGAGGACTGAAATGTGTATATTGGTCAGGATCAGTGATGAGAGATAGATGAAGAACATacgtgcgagtgtgtgagtgtgggtatgagtgtgtgtctgaatatttGGCATCAGCGAGGCTGTGAGCATACGTGATGACTgccatgtgtaaaaaaaaaaataaaaagaaggatGTGTTCTCTAATGTAAATCCAGTATAGATGAGCTGTGTGTCATAGTCCGGAATGAGAGGAGatgaattttttaaagaatgttaaTAGCACCAAAAGAagcaaattaaatgtttaaacaaagaGGATGGAAAGAATCCA

Function

symbol description
mtmr6 Predicted to enable phosphatidylinositol-3,5-bisphosphate phosphatase activity and phosphatidylinositol-3-phosphatase activity. Predicted to be involved in phosphatidylinositol dephosphorylation. Predicted to act upstream of or within dephosphorylation. Predicted to be active in cytoplasm; membrane; and nuclear envelope. Orthologous to human MTMR6 (myotubularin related protein 6).

NR:

description
PREDICTED: myotubularin-related protein 6

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K18083 MTMR6_7_8; myotubularin-related protein 6/7/8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298283.1 True 2458 mRNA 0.53 14 19579310 19593452

Neighbor

gene id symbol gene type direction distance location
pcyt1ba pcyt1b,LOC107721854,LOC107590340,LOC107586799,LOC107705205 coding upstream 72774 19498302 ~ 19506536 (+)
arxa arx,arxa,LOC107586699,LOC107663641 coding upstream 142550 19429768 ~ 19436760 (+)
ndufb4 ndufb4 coding upstream 183420 19391973 ~ 19395890 (+)
LOC117595802 NA coding upstream 242660 19335026 ~ 19336650 (+)
LOC117595764 NA coding upstream 244030 19332174 ~ 19335280 (+)
amer2 amer2 coding downstream 7113 19600565 ~ 19603770 (+)
LOC113541258 LOC108256477,LOC108439743,LOC107705271,LOC107721848,LOC107590344,LOC107586729,LOC107671347 coding downstream 146605 19740057 ~ 19750055 (+)
LOC113541169 klhl34 coding downstream 290595 19884047 ~ 19887557 (+)
sh3kbp1 sh3kbp1,LOC107590295 coding downstream 457284 20050736 ~ 20112391 (+)
map3k15 map3k15,LOC107685453 coding downstream 522562 20116014 ~ 20152049 (+)
LOC117595782 NA non-coding upstream 57050 19521365 ~ 19522260 (+)
G334733 NA non-coding upstream 227558 19345889 ~ 19351752 (+)
G334575 NA non-coding upstream 646059 18933049 ~ 18933251 (+)
G334573 NA non-coding upstream 646600 18932502 ~ 18932710 (+)
G334386 NA non-coding upstream 725307 18761089 ~ 18854003 (+)
G334888 NA non-coding downstream 111233 19704685 ~ 19707006 (+)
G335214 NA non-coding downstream 173018 19766470 ~ 19766826 (+)
G335215 NA non-coding downstream 174011 19767463 ~ 19768343 (+)
G335243 NA non-coding downstream 231251 19824703 ~ 19824911 (+)
G335345 NA non-coding downstream 372092 19965544 ~ 20029491 (+)
G334838 NA other upstream 2237 19576111 ~ 19577073 (+)
dap dap,LOC107705232,LOC107701690,LOC107654217 other upstream 151374 19317857 ~ 19427936 (+)
LOC117595806 zfhx4,LOC107590192 other upstream 831833 18712048 ~ 18747477 (+)
G334373 NA other upstream 861357 18693149 ~ 18717953 (+)
mcmdc2 mcmdc2 other upstream 1093301 18467878 ~ 18486009 (+)
cip2a kiaa1524 other downstream 43416 19636868 ~ 19703804 (+)
si:ch73-264p11.1 sh21b other downstream 85029 19678481 ~ 19683870 (+)
G335231 NA other downstream 195131 19788583 ~ 19789058 (+)
smpx smpx,LOC107590224,LOC107663668,LOC107721880,LOC107705278,LOC107671350 other downstream 276929 19870381 ~ 19882836 (+)
camk2n2 camk2n2,LOC108256106,LOC107590228,LOC108443638,LOC103024774,LOC107586800 other downstream 391880 19985332 ~ 19988036 (+)

Expression


Co-expression Network