ppox (ppox)


Basic Information

Item Value
gene id ppox
gene name ppox
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 469956 ~ 483298 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298297.1
AGGTGGCGCTGGAGCACATGCACCGCTCAAATACAACCGCGAGAGAAACGCGGAAGTGCCTGGCTTTAAAAGCAAGTGAAGATTTTTCAGGCTGGAGGTTTTTGCTTTTACGCTCTGATTTATGACCACAAACACCGgtgtgtgtgtgtggggaagtgtgtgtgaatgcagaaGTGTGTAGCTGTTCTTGGAGGGGGGATCAGCGGTCTTTCAGCCTGCTATTACCTCAGCAAAACCTCCAATGTCTCCAAgGTGGTGCTGTTGGAGGCGACGGGGAGGTTTGGAGGGTGGATAAACACTACTCGTAGGGAGGATGGAGCTGTATTTGAACACGGCCCGAGAGGAGTCCGACCGGCCGGAGCAGTGGGGAGAAACACACTAAACATGCTGTCTGATTTGGGTCTGGAGCGTGAGATCCTGCCGGTTCCTCATGATCACGTGGCCTCCAAGAACCGTTTCCTGTACGTGAATGGAGAGTTACACAAACTGCCCTCCAGCATCAGtGGAGTGGTGAAAACGGTGCCTCCGTTTTCCCGTCCCATCATCCTCAGCGTGATGAAGGAGGTCCTGGTGAGGAAGGGGAAGCAGGAGGACGAGTCCGTGCACTCGTTCGTGTCCAGGAGATTGGGCTCTGAGttagcAGACATAGCGATGGACTGTCTGTGTCGTGGAGTGTTTGCGGGAGACAGCAGGAAGCTGAGTGTGCGCTCGTGTTTCCCGCCGCTCCACAGAGCCGAACAGGACTGGGGCTCCGTCCTGCTGGGCATGCTCTTCGGAGGAGAGAAGGCGGGTACAGGCGGCACGTCGGCGCTGGCACAGCGGGCGAAGGCGGAGTCGTGGGCGCAGTGGTCTCTGACAGACGGGATGCAGACTCTCCCTGACGCCCTGCAGGAGGCGCTGAGGGGGCGTGAGCGAGTGGAGATCCATCACAGCGCCCCCGTCAGGTCTCTGAGCTACACTGCGGGCGGCTGGGAGATTAAACAGGAGGACGGAGCAACATTAAAAGCTGATCATGTGATTTCTGCTCTACCTGcttcagTGTTGGCCTCATTACTGCCCCCTGCTGCCAGATCACTGTCACATCAGCTGTGTGAGATAAACTCTGTGAGCGTCGGGGTGGTGAACCTGGAGTACGAGGGATCTGTGTTACCTGTAACGggttttGGACACTTGATCCCTTCGTCAGAGGACAGAGGTCTGTTAGGGATCGTGTACGACTCGGTTCTGTTTCCACAACACAACCGGAGAGGAGAACCCACAACCAGAAtgacagtgATGATGGGAGGTGCTTGGTTTGAAGAGACATTAGGTGGTCCAGATGAGGTGAAGGTTGAGGTGCTGTTGGATCGAGCGGTCCAGGCCGTGAGGTCGCACCTGaacattacatcatcacctGTGTGGAGTAAAGCTGCTGTCCTGAAGaacTGCATTCCACAGTATCACCTGGGACACTGGAAGCGACTCGAGGCGATGAGGCGGTACATCAGCGATCACGCTCTTCCACTCACGCTGACTGGAGCCTCATTTGACGGTGTCTCTGTTAATGATGTCATATTTAGTGGACGGACAGCAGCAGAGGGGCTTGTGGGAAAAATCTGAAGCGTAATAAGTTGATTAATAAACCATATCTCAGTAACACTGTAGAACCTCCACTGGGCTTCAGGTATTTCCTTTGTGATGAATGTAGAAGCTTCAAATCTGACCAGTGTGACTCATTCAGCTATTTttacaaatgaaattttatttaataaagctaTATAATTGAGTATA
>XM_034298298.1
GCACCGCTCAAATACAACCGCGAGAGAAACGCGGAAGTGCCTGGCTTTAAAAGTGAAGATTTTTCAGGCTGGAGGTTTTTGCTTTTACGCTCTGATTTATGACCACAAACACCGGTgtgtgtgtgtgtggggaagtgtgtgtgaatgcagaaGTGTGTAGCTGTTCTTGGAGGGGGGATCAGCGGTCTTTCAGCCTGCTATTACCTCAGCAAAACCTCCAATGTCTCCAAgGTGGTGCTGTTGGAGGCGACGGGGAGGTTTGGAGGGTGGATAAACACTACTCGTAGGGAGGATGGAGCTGTATTTGAACACGGCCCGAGAGGAGTCCGACCGGCCGGAGCAGTGGGGAGAAACACACTAAACATGCTGTCTGATTTGGGTCTGGAGCGTGAGATCCTGCCGGTTCCTCATGATCACGTGGCCTCCAAGAACCGTTTCCTGTACGTGAATGGAGAGTTACACAAACTGCCCTCCAGCATCAGtGGAGTGGTGAAAACGGTGCCTCCGTTTTCCCGTCCCATCATCCTCAGCGTGATGAAGGAGGTCCTGGTGAGGAAGGGGAAGCAGGAGGACGAGTCCGTGCACTCGTTCGTGTCCAGGAGATTGGGCTCTGAGttagcAGACATAGCGATGGACTGTCTGTGTCGTGGAGTGTTTGCGGGAGACAGCAGGAAGCTGAGTGTGCGCTCGTGTTTCCCGCCGCTCCACAGAGCCGAACAGGACTGGGGCTCCGTCCTGCTGGGCATGCTCTTCGGAGGAGAGAAGGCGGGTACAGGCGGCACGTCGGCGCTGGCACAGCGGGCGAAGGCGGAGTCGTGGGCGCAGTGGTCTCTGACAGACGGGATGCAGACTCTCCCTGACGCCCTGCAGGAGGCGCTGAGGGGGCGTGAGCGAGTGGAGATCCATCACAGCGCCCCCGTCAGGTCTCTGAGCTACACTGCGGGCGGCTGGGAGATTAAACAGGAGGACGGAGCAACATTAAAAGCTGATCATGTGATTTCTGCTCTACCTGcttcagTGTTGGCCTCATTACTGCCCCCTGCTGCCAGATCACTGTCACATCAGCTGTGTGAGATAAACTCTGTGAGCGTCGGGGTGGTGAACCTGGAGTACGAGGGATCTGTGTTACCTGTAACGggttttGGACACTTGATCCCTTCGTCAGAGGACAGAGGTCTGTTAGGGATCGTGTACGACTCGGTTCTGTTTCCACAACACAACCGGAGAGGAGAACCCACAACCAGAAtgacagtgATGATGGGAGGTGCTTGGTTTGAAGAGACATTAGGTGGTCCAGATGAGGTGAAGGTTGAGGTGCTGTTGGATCGAGCGGTCCAGGCCGTGAGGTCGCACCTGaacattacatcatcacctGTGTGGAGTAAAGCTGCTGTCCTGAAGaacTGCATTCCACAGTATCACCTGGGACACTGGAAGCGACTCGAGGCGATGAGGCGGTACATCAGCGATCACGCTCTTCCACTCACGCTGACTGGAGCCTCATTTGACGGTGTCTCTGTTAATGATGTCATATTTAGTGGACGGACAGCAGCAGAGGGGCTTGTGGGAAAAATCTGAAGCGTAATAAGTTGATTAATAAACCATATCTCAGTAACACTGTAGAACCTCCACTGGGCTTCAGGTATTTCCTTTGTGATGAATGTAGAAGCTTCAAATCTGACCAGTGTGACTCATTCAGCTATTTttacaaatgaaattttatttaataaagctaTATAATTGAGTATA

Function

symbol description
ppox Predicted to enable oxygen-dependent protoporphyrinogen oxidase activity. Predicted to be involved in heme biosynthetic process. Predicted to act upstream of or within porphyrin-containing compound biosynthetic process. Predicted to be intrinsic component of mitochondrial inner membrane. Is expressed in blood cell; intermediate cell mass of mesoderm; and lateral plate mesoderm. Used to study variegate porphyria. Human ortholog(s) of this gene implicated in variegate porphyria. Orthologous to human PPOX (protoporphyrinogen oxidase).

NR:

description
protoporphyrinogen oxidase-like isoform X1

GO:

id name namespace
GO:0006779 porphyrin-containing compound biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004729 oxygen-dependent protoporphyrinogen oxidase activity molecular_function

KEGG:

id description
K00231 PPOX, hemY; protoporphyrinogen/coproporphyrinogen III oxidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298297.1 True 1770 mRNA 0.53 14 469956 483298
XM_034298298.1 False 1749 mRNA 0.53 14 469975 483298

Neighbor

gene id symbol gene type direction distance location
LOC113524801 NA coding upstream 3333 460213 ~ 466623 (+)
LOC117595771 NA coding upstream 12977 455516 ~ 456979 (+)
dpy19l1l dpy19l1 coding upstream 119407 333684 ~ 350549 (+)
zgc:114181 LOC108261199 coding upstream 238462 222517 ~ 231494 (+)
ethe1 ethe1,LOC106582613,LOC106605166 coding upstream 354810 108218 ~ 115146 (+)
zgc:162160 LOC108256255,LOC108437392,LOC107719116,LOC107666762,LOC107737835,LOC107592933 coding downstream 22016 505314 ~ 524157 (+)
etsrp LOC108256243 coding downstream 167620 650918 ~ 657392 (+)
pycard NA coding downstream 175183 658481 ~ 663976 (+)
LOC113524791 LOC108256242 coding downstream 191570 674868 ~ 680370 (+)
gramd1a gramd1a,LOC108256231 coding downstream 236091 719389 ~ 745520 (+)
G324116 smarcc1 non-coding upstream 23831 444777 ~ 446125 (+)
G324083 NA non-coding upstream 32146 365488 ~ 437810 (+)
G324089 NA non-coding upstream 108891 359123 ~ 361065 (+)
G324064 NA non-coding upstream 114653 326531 ~ 355303 (+)
G324139 NA non-coding downstream 60570 543868 ~ 548283 (+)
G324140 LOC106578455,LOC103388722 non-coding downstream 69425 552723 ~ 557118 (+)
G324142 dyrk1b,LOC102785375 non-coding downstream 72499 555797 ~ 556519 (+)
G324151 NA non-coding downstream 89708 573006 ~ 575138 (+)
G324125 NA non-coding downstream 101881 585179 ~ 588909 (+)
G324120 NA other upstream 3331 454910 ~ 466625 (+)
G324085 NA other upstream 27669 438391 ~ 442287 (+)
G324067 NA other upstream 57847 354781 ~ 412109 (+)
tbx20 tbx20,LOC107600539,LOC107719124,LOC107592953,LOC107666841 other upstream 142017 240370 ~ 327939 (+)
G324068 NA other upstream 177368 241197 ~ 292588 (+)
G324143 NA other downstream 74117 557415 ~ 558139 (+)
G324123 NA other downstream 83904 567202 ~ 635045 (+)
G324161 fbl,LOC107719117,LOC107666874,LOC107737817,LOC107686016,LOC107600489 other downstream 124314 607612 ~ 610009 (+)
G324206 NA other downstream 262375 745673 ~ 748475 (+)
psmc4 psmc4,LOC107719110 other downstream 290991 774289 ~ 806528 (+)

Expression


Co-expression Network