LOC113524788


Basic Information

Item Value
gene id LOC113524788
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 709872 ~ 712363 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003402592.2
AGTTTTCAGTCGCACTGTGGatgttctctgtattttttcacaatttcacaggatttatttcttttttatttctattttaattcGGTGTGAGGAGACTTTAGAAAACtcgttattttttaaaatcttttttggTGACGCTTTTGATTTGACAGGCTTTTACTTTTCTATTCTCTCTAAAGGACTCatacttcattttttaaaaatgagatttaGAGGATTTTGTCTAAATACTGCGGAAACAACGGgcatttcttcttcttgtgcTTTTGTCGTGTTTCCTGGATACGGAAAAGAGCCGTGATGTGTAGCGTCCTGATTACATCATCTGATTTGTttcacagtttttgcagtgaattcttgttaaaaaaacctctaaacATAAACTTTGTATACAGAGATGATGTTTAtacaaaaaagaagcaaaagagTGATAGAGAATGTAAAAGTCTCTGATCTCAGTCACACCCTGAAAGCAACGTGATCGCTGctggTTGTTGGACAGCTTTCTGCTCAACCATCCGCAATTTAGCGCTGTGGAAGAGGATCAGAAACCTGTTCACGCGTCGAGGTGACGATGTGAGACTGTCGGAGGAGGAAACGCTCCAGAGCTCAGTTCGGCCGTTCTTGTCGAACTACGgaatctgtttttaaataaaaaagtgatatATATAAAAACGCATGTTGTGGACATTACTTCATCTAATTATTAAGTTCATCATTAAAGTAAACTATAAATGCTGCTGTTCAGTAACGTAAACACAGTAACTAACACTCATATTAACTACTTTCTTCCAAGCTGAATAATCAAAATTAAACCCACACACAAAAGTTCTCAACAGTTCTCTGTTCagttctctattctgattggtcagaaggtgttgattagttttctataacagcagctctgacagtagcgcaggctgtaattcaaatcataggtttatattcattttgttattaatgAACAGAAAGTGTGCATGGTGCTGTAGGTTcgctataaggagatgtttatttaactctttatttatggaaggagtctccagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003402592.2 True 1044 lncRNA 0.36 3 709872 712363

Neighbor

gene id symbol gene type direction distance location
si:ch211-225p5.8 LOC108256244 coding downstream 39037 664062 ~ 670835 (-)
fli1rs LOC108256249,LOC108437389 coding downstream 68365 613922 ~ 641507 (-)
fbl fbl,LOC107737817,LOC107686016,LOC107666874,LOC107719117 coding downstream 97752 606087 ~ 612120 (-)
alkbh8 alkbh8 coding downstream 104857 598396 ~ 605015 (-)
LOC113524795 NA coding downstream 165839 538195 ~ 544033 (-)
scn1ba LOC108256230,LOC108437383 coding upstream 40279 752642 ~ 770973 (-)
mtdhb LOC108256290 coding upstream 108259 820622 ~ 831921 (-)
ubxn11 ubxn11 coding upstream 135472 847835 ~ 856733 (-)
LOC113525074 NA coding upstream 184963 897326 ~ 902262 (-)
si:dkey-11p23.7 siglec15 coding upstream 203556 915919 ~ 919909 (-)
G324563 NA non-coding downstream 8614 695222 ~ 701258 (-)
LOC117595774 NA non-coding downstream 8627 698555 ~ 701245 (-)
LOC113524793 NA non-coding downstream 11431 695319 ~ 698441 (-)
G324562 NA non-coding downstream 28391 680848 ~ 681481 (-)
LOC117595770 NA non-coding downstream 51754 657322 ~ 658118 (-)
G324571 NA non-coding upstream 966 713329 ~ 713785 (-)
G324581 NA non-coding upstream 15448 727811 ~ 748501 (-)
G324589 NA non-coding upstream 31184 743547 ~ 783093 (-)
G324580 NA non-coding upstream 34656 747019 ~ 747564 (-)
G324584 NA non-coding upstream 68722 781085 ~ 782326 (-)
dyrk1b dyrk1b,LOC108256247,LOC107685988,LOC107719113,LOC107592201 other downstream 134601 549060 ~ 575271 (-)
smarcc1a smarcc1,LOC107600486,LOC107666814,LOC107686050 other downstream 255049 374199 ~ 454823 (-)
slc4a7 slc4a7,LOC108256322,LOC107686077,LOC107666816 other downstream 313299 350738 ~ 396573 (-)
herpud2 LOC108256328,LOC108431059,LOC107666842 other downstream 378111 234506 ~ 331761 (-)
LOC113523705 LOC108261200 other downstream 498403 199459 ~ 211469 (-)
G324579 NA other upstream 14264 726627 ~ 727634 (-)
nek11 LOC108256279 other upstream 330950 1043313 ~ 1102117 (-)
scap scap,LOC107600505,LOC107717374,LOC107668298,LOC107713836 other upstream 582502 1294865 ~ 1342071 (-)
G324748 NA other upstream 658113 1370476 ~ 1371029 (-)
kif13a kif13a other upstream 690901 1403264 ~ 1451000 (-)

Expression


Co-expression Network