LOC113532560


Basic Information

Item Value
gene id LOC113532560
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 4800572 ~ 4803511 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403355.2
attaattctttaattctCTATGGAAAACTGGGGGCTGATATGACACCTGGCTATACTTATTTATAGCCACAGAGTCATATTGTTTAATTCAGAGAGgctttttattgctttaatggTGTTCTCCCACTTGGGTATTTTCAGGGAAACGCAGGCAGATGTGAAGAGGTTTTGGGGGTTCAGCAATGATACCATTGAGGGCAGTGCGCCATTAATGCTGGagtattttcactttcatttgATCCCTCCTCAAGAGCTTCTTCATTTGGCCCAGACAGATTGAGTCAATCTTCGCTGAGCTCTTCAGCACCTCATAAAGCAACACCATGGGAGCACTTATTCTGGCAAGGAGCACATTCTGAAATATATCATATGCCTTGTTATAGAAACGTAAAGCAAAAGTTTGGCTAGTATATCAGATTTACCTAAATCTCCACTTACCCCAAATAtctgtaaatttgtaaaatggCAGGGATAGACTGTATCTATAAATGCAAGCTGTAAAAGGGattatattatcatctgcaTCAGTGCCAGCTTTCTGTACATTTCCTCCTATTGTGTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403355.2 True 563 lncRNA 0.40 3 4800572 4803511

Neighbor

gene id symbol gene type direction distance location
LOC113532696 man1c1,LOC108426368,LOC105006133,LOC106582899,LOC106605146,LOC107601975,LOC107713850 coding upstream 29956 4556125 ~ 4770616 (+)
slc9a1a slc9a1,LOC108256597,LOC107688187,LOC107671463,LOC107564092,LOC107552533 coding upstream 255225 4501487 ~ 4545347 (+)
dhdds dhdds,LOC106582847,LOC106605152 coding upstream 411111 4378023 ~ 4389461 (+)
si:dkeyp-97a10.2 LOC108256364 coding upstream 497042 4294369 ~ 4303530 (+)
LOC113532664 NA coding upstream 512342 4283288 ~ 4288230 (+)
ifnlr1 NA coding downstream 38948 4842459 ~ 4856152 (+)
myom3 myom3 coding downstream 61058 4864569 ~ 4918469 (+)
atp6v1c1a atp6v1c1,atp6v1c1a,LOC104937165,LOC102207943,LOC102305030,LOC100703061 coding downstream 205033 5008544 ~ 5019097 (+)
cep72 cep72 coding downstream 243455 5046966 ~ 5056667 (+)
trip13 trip13,LOC107754445,LOC107677654,LOC107659068,LOC107729803,LOC107736543 coding downstream 293630 5097141 ~ 5105422 (+)
G326374 NA non-coding upstream 144057 4649025 ~ 4656515 (+)
G326369 NA non-coding upstream 213250 4579550 ~ 4587322 (+)
G326359 NA non-coding upstream 257877 4542427 ~ 4542695 (+)
LOC117595758 NA non-coding upstream 331722 4466508 ~ 4468850 (+)
G326288 NA non-coding upstream 441454 4319215 ~ 4359118 (+)
G326429 NA non-coding downstream 326 4803837 ~ 4804059 (+)
G326440 NA non-coding downstream 120667 4924178 ~ 4924636 (+)
G326458 NA non-coding downstream 179962 4983473 ~ 4983680 (+)
G326462 LOC108256729,LOC108426375 non-coding downstream 216271 5019782 ~ 5029790 (+)
G327071 NA non-coding downstream 737847 5541358 ~ 5541889 (+)
LOC113532991 LOC108256125 other upstream 366321 4398659 ~ 4434251 (+)
hmgn2 NA other upstream 405788 4391520 ~ 4394784 (+)
hamp NA other upstream 787034 4011380 ~ 4013538 (+)
G325435 NA other upstream 2230833 2565700 ~ 2569739 (+)
LOC113533074 LOC108256184 other upstream 2585162 2204846 ~ 2215410 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other downstream 117469 4920980 ~ 4923681 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other downstream 121270 4924781 ~ 4930155 (+)
klf10 LOC108256604 other downstream 180904 4984415 ~ 4989316 (+)
acbd7 acbd7,LOC108256514 other downstream 507698 5311209 ~ 5314614 (+)
G326997 NA other downstream 528757 5332268 ~ 5338251 (+)

Expression


Co-expression Network