LOC113541248


Basic Information

Item Value
gene id LOC113541248
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 15570863 ~ 15579798 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404160.2
ctccttttttttttcttctgccaGTCAGTAGCCTGGCTGCAGCATTCTGCCCAAGCCTTAGGCGGGACAGTTGCCGCTGACAGAGTCCTGGATAGAGAGAGTTGCAATTGTCCAATCTAGatgtaataaaagcatgaataaTTAACTctaaatttttaaaactaaGCAAAGCTTTTAGCTTAGAAATCATCCCAAGCTGGTAGAAGCTGCCTTTAACAACAGAATTTATCTGTCTATCAAAGCTAAGAGTTGAGTCAATTATAAAACCAAGATTTCTCACACTGTCTTTCACAGTTATTTCTAAAGGAGCGAGAATACTGGTTatcttctctgtgtgttttgggggaacaaatataataatctCTGACTTTCTTTCGAAAGTAAAGTAAACGTAGATTGTGTAAGCAGATTGTATCAGTGCATCTTCTAGTTACATTCAGCACTTGAAGCCATCTGCCCTCTATCTCCAGATCTTTCTTTCACTATGTTTATGCTGCCAGTATTTCAGGGAAAAAATGTTATATTCTTAAGTGAAAACtcc
>XR_004576951.1
ctccttttttttttcttctgccaGTCAGTAGCCTGGCTGCAGCATTCTGCCCAAGCCTTAGGCGGGACAGTTGCCGCTGACAGAGTCCTGGATAGAGAGAGTTGCAATTGTCCAATCTAGatgtaataaaagcatgaataaTTAACTctaaatttttaaaactaaGCAAAGCTTTTAGCTTAGAAATCATCCCAAGCTGGTAGAAGCTGCCTTTAACAACAGAATTTATCTGTCTATCAAAGCTAAGAGTTGAGTCAATTATAAAACCAAGATTTCTCACACTGTCTTTCACAGTTATTTCTAAAGGAGCGAGAATACTGGTTatcttctctgtgtgttttgggggaacaaatataataatctCTGACTTTCTTTCGAAAGTAAAGTAAACGTAGATTGTGTAAGCAGATTGTATCAGTGCATCTTCTAGTTACATTCAGCACTTGAAGCCATCTGCCCTCTATCTCCAGATCTTTCTTTCACTATGTTTATGCCATCATCTCCAGCTTTTAGGGCTCCACAGTGGAAAGGTCTGATGGGGCATGAGGGCAGCAAGGTCAGGTTCTCCAGATGATTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404160.2 False 541 lncRNA 0.38 3 15570863 15571817
XR_004576951.1 True 577 lncRNA 0.40 3 15570863 15579798

Neighbor

gene id symbol gene type direction distance location
si:ch73-173p19.1 LOC108256550 coding upstream 173336 15382986 ~ 15397527 (+)
flj11011l ube2w,LOC103354920,LOC107725703,LOC106591739,LOC107754202 coding upstream 441260 15121226 ~ 15129603 (+)
trpa1b trpa1 coding upstream 460549 15084521 ~ 15110314 (+)
eya1 eya1,LOC107657823 coding upstream 722779 14796644 ~ 14848084 (+)
xkr9 xkr9 coding upstream 849286 14714795 ~ 14721577 (+)
tpk1 tpk1 coding downstream 7504 15587302 ~ 15614891 (+)
panx1a panx1 coding downstream 40350 15620148 ~ 15629965 (+)
hephl1a LOC108256642 coding downstream 497093 16076891 ~ 16096771 (+)
LOC113541322 NA coding downstream 620698 16200496 ~ 16219013 (+)
prex2 prex2,LOC107741010,LOC107686687,LOC107758281,LOC107695383 coding downstream 747187 16326985 ~ 16443144 (+)
LOC113541145 NA non-coding upstream 151940 15413872 ~ 15418923 (+)
G332527 NA non-coding upstream 238431 15328614 ~ 15332432 (+)
G332348 NA non-coding upstream 368558 15201817 ~ 15202305 (+)
G332334 NA non-coding upstream 457349 15065975 ~ 15113514 (+)
G332248 NA non-coding upstream 614796 14955860 ~ 14956067 (+)
G332650 NA non-coding downstream 12290 15592088 ~ 15617234 (+)
G332788 NA non-coding downstream 461586 16041384 ~ 16041587 (+)
G332790 LOC108272979,LOC108266882 non-coding downstream 521952 16101750 ~ 16102212 (+)
G332791 NA non-coding downstream 522473 16102271 ~ 16102597 (+)
G332859 NA non-coding downstream 639755 16219553 ~ 16220945 (+)
G332636 NA other upstream 4200 15566175 ~ 15566663 (+)
stau2 stau2,LOC107691439 other upstream 255895 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other upstream 304968 15251635 ~ 15265895 (+)
G331476 NA other upstream 2312447 13257894 ~ 13258416 (+)
G331263 LOC108256200,LOC100304628 other upstream 2858185 12706939 ~ 12712678 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 1520366 17100164 ~ 17110027 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other downstream 1705284 17285082 ~ 17302004 (+)
rnf6 rnf6,LOC106590444 other downstream 1956146 17535944 ~ 17542387 (+)
pan3 pan3,LOC107705213 other downstream 2181733 17761531 ~ 17796521 (+)
G333943 LOC108256468 other downstream 2406964 17986762 ~ 17993014 (+)

Expression


Co-expression Network