LOC113541266


Basic Information

Item Value
gene id LOC113541266
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 15935828 ~ 15943189 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404161.2
CATGATAGAACTAGAGATGaaatgatgtatgtgtgtgaattatGTATTGATGCCTTTAGGTATTTGTCCTGAGCAGTGGGAAGTCAACCTccagcacaaacacactctaTATTCACTTTAAAGCTGGATATTTACAGCCAGTGTGAATCCTTCATGAATGGTCACAGTAGGACTCGCAGTAAATGGATTAGAAATGATGCTCGTGAAAGCTCTAGTGGATTTGCTGCTTCCTCTCTGGACTGAGgttctcTACAGCTGTGTTATAACCTCGGGGGTCTTCTCAAACCCTTCACCATCAATCTGTCTCAGCGCAATTTGGCCAACAGACATCCACACAGCGTGAACATTACcagaatagagagagaaatctgACAGCATTTTACATTTCTACAGCTTCCTACATAATCAGGGCTGCGCAACAGGAACTGATGAGGTGATGAGGTCGAGATGTGAAGCAACATCAAAAGTGTAGTctggattagtgtgtgtgtgtgtgtgttctctagTCATTTTTATCTTCTGTCACTCTGAGTGAATAGTAGTAGTCCATACTaatgttatg

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404161.2 True 562 lncRNA 0.42 3 15935828 15943189

Neighbor

gene id symbol gene type direction distance location
LOC113541299 cntnap2,cntnap2a,LOC108256479,LOC108256478,LOC108256453 coding downstream 36230 15777021 ~ 15899598 (-)
LOC113541101 NA coding downstream 353794 15579275 ~ 15582034 (-)
LOC113541144 cntnap2,cntnap2a,LOC108256478,LOC108256479,LOC108256453 coding downstream 376373 15417104 ~ 15559455 (-)
LOC113541141 LOC108256549 coding downstream 521385 15398281 ~ 15414443 (-)
LOC113541204 LOC108256300 coding downstream 555553 15337379 ~ 15380275 (-)
LOC113541324 LOC108256119 coding upstream 153792 16096981 ~ 16115913 (-)
tnfrsf11a tnfrsf11a coding upstream 181928 16125117 ~ 16140956 (-)
relch kiaa1468,zgc:66014,LOC107584935,LOC107595141 coding upstream 201867 16145056 ~ 16200451 (-)
arfgef1 arfgef1,LOC107686689,LOC107727224,LOC107595140,LOC107584936 coding upstream 276900 16220089 ~ 16274511 (-)
csrnp1b csrnp1,csrnp1b coding upstream 744533 16687722 ~ 16699950 (-)
G332682 NA non-coding downstream 305384 15630223 ~ 15630444 (-)
G332676 NA non-coding downstream 315111 15620506 ~ 15620717 (-)
G332637 NA non-coding downstream 369182 15566187 ~ 15566646 (-)
G332580 NA non-coding downstream 538696 15345272 ~ 15397132 (-)
G332196 NA non-coding downstream 1138630 14714217 ~ 14797198 (-)
LOC113541293 NA non-coding upstream 35927 15979116 ~ 15985108 (-)
G332797 NA non-coding upstream 98123 16041312 ~ 16041512 (-)
LOC117595797 NA non-coding upstream 117091 16060280 ~ 16071498 (-)
G333175 sulf1 non-coding upstream 677569 16620758 ~ 16622013 (-)
G333197 slco5a1,LOC108256392,LOC105018377,LOC106569033,LOC107690218 non-coding upstream 695975 16639164 ~ 16640767 (-)
sec61g NA other downstream 316986 15615498 ~ 15618842 (-)
LOC113541115 kcnb2,si:dkey-192j17.1,LOC107657825,LOC107560266,LOC108426548,LOC107754205,LOC107589933 other downstream 870018 14962837 ~ 15065810 (-)
LOC113541102 msc other downstream 998424 14932995 ~ 14937404 (-)
LOC113541105 NA other downstream 2173213 13757658 ~ 13762615 (-)
LOC113541288 NA other downstream 3257890 12676545 ~ 12677938 (-)
cpa6 cpa6,LOC106579545 other upstream 338082 16281271 ~ 16312916 (-)
oxsr1b oxsr1,oxsr1b other upstream 886601 16829790 ~ 16879884 (-)
myd88 myd88 other upstream 941962 16885151 ~ 16889424 (-)
zbtb47b zbtb47,znf652,LOC108256615 other upstream 1172909 17116098 ~ 17139685 (-)
vipr1b vipr1,vipr1b,LOC108256372,LOC107733233,LOC107754936 other upstream 1242335 17185524 ~ 17239116 (-)

Expression


Co-expression Network