LOC117595758


Basic Information

Item Value
gene id LOC117595758
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 4466508 ~ 4468850 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004576935.1
GGCCCGTCCCACCACCGCggtggagaggaggaggaggaggaagaggaagcagGTAGAAATACTTCTCCAACTGCTTGGACGCCATGTTGTGAATGGAGCCTGATCATATAACCACATGATGCAAACATAACCCTGGGGACTCAAAAGCCCAGACTTCCTGTAGGCCACCGTGTAAATTGTAACGAGGAGGCCATGAGCGCGACGCTACATACGTCTGGGATTCCCCTGGGAGACCTGACATCCTGTAAATCATCAATTCTACATCCAGAACCCCTCAAACAGCAGGTGAGGAAATCCACACGTGGTGCCAGGCAGCCATGGTGCTGTGATCATAATCGAGAGGAAAACGGCAACAGAGGTGCCAGCTTGACAAAAAGAAGGCAGACCACCTGGTTAGATGAAAAATGCAAGGCTGCAGTGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004576935.1 True 423 lncRNA 0.52 3 4466508 4468850

Neighbor

gene id symbol gene type direction distance location
dhdds dhdds,LOC106582847,LOC106605152 coding upstream 77047 4378023 ~ 4389461 (+)
si:dkeyp-97a10.2 LOC108256364 coding upstream 162978 4294369 ~ 4303530 (+)
LOC113532664 NA coding upstream 178278 4283288 ~ 4288230 (+)
iglon5 iglon5,zgc:110372,LOC107707642,LOC107671460,LOC107733024,LOC106582734 coding upstream 259989 4070056 ~ 4206519 (+)
LOC113532613 usf2 coding upstream 464072 3980428 ~ 4002436 (+)
slc9a1a slc9a1,LOC108256597,LOC107688187,LOC107671463,LOC107564092,LOC107552533 coding downstream 32637 4501487 ~ 4545347 (+)
LOC113532696 man1c1,LOC108426368,LOC105006133,LOC106582899,LOC106605146,LOC107601975,LOC107713850 coding downstream 87275 4556125 ~ 4770616 (+)
ifnlr1 NA coding downstream 373609 4842459 ~ 4856152 (+)
myom3 myom3 coding downstream 395719 4864569 ~ 4918469 (+)
atp6v1c1a atp6v1c1,atp6v1c1a,LOC104937165,LOC102207943,LOC102305030,LOC100703061 coding downstream 539694 5008544 ~ 5019097 (+)
G326288 NA non-coding upstream 107390 4319215 ~ 4359118 (+)
G326281 NA non-coding upstream 114661 4348781 ~ 4351847 (+)
G326193 NA non-coding upstream 493506 3967532 ~ 3973002 (+)
G326178 NA non-coding upstream 520375 3945382 ~ 3946133 (+)
G326131 NA non-coding upstream 585567 3880677 ~ 3880941 (+)
G326359 NA non-coding downstream 73577 4542427 ~ 4542695 (+)
G326369 NA non-coding downstream 110700 4579550 ~ 4587322 (+)
G326374 NA non-coding downstream 180175 4649025 ~ 4656515 (+)
LOC113532560 NA non-coding downstream 331722 4800572 ~ 4803511 (+)
G326429 NA non-coding downstream 334987 4803837 ~ 4804059 (+)
LOC113532991 LOC108256125 other upstream 32257 4398659 ~ 4434251 (+)
hmgn2 NA other upstream 71724 4391520 ~ 4394784 (+)
hamp NA other upstream 452970 4011380 ~ 4013538 (+)
G325435 NA other upstream 1896769 2565700 ~ 2569739 (+)
LOC113533074 LOC108256184 other upstream 2251098 2204846 ~ 2215410 (+)
fabp10a LOC108256542,LOC107677662,LOC103026354,LOC106582922 other downstream 452130 4920980 ~ 4923681 (+)
srsf10a LOC108256391,LOC108426370,LOC101486875 other downstream 455931 4924781 ~ 4930155 (+)
klf10 LOC108256604 other downstream 515565 4984415 ~ 4989316 (+)
acbd7 acbd7,LOC108256514 other downstream 842359 5311209 ~ 5314614 (+)
G326997 NA other downstream 863418 5332268 ~ 5338251 (+)

Expression


Co-expression Network