LOC117595777


Basic Information

Item Value
gene id LOC117595777
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13009928 ~ 13021871 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004576954.1
CGAAAATATCGCACCTCATATTTAGCCATTAGCTTTATTATAGCGTTATGTAGTTGACAGCTAGAGTCAATGCGCGACATTTTTTGGCGATGATGGCCGTGTCAGCTGATTCGGAGCGTTTGGCCTCTTTGGACTCGTTGGTGTGATACGTCCCCTTGTGCCGGAACATGTAGCGTATCAGGAACAACAGAATGCACAGGATGGTGAAGATGACCACAGCAATGATGCCTAAATCAAGAACAGAGAATATGGAAACGTCCACAGAAATATTGCTGACGTAACTAACAgGTAGTAATTCTACATCAGCCACGACATCCTTTACCTCCATCCAGGTGCCAGGGGTCGGTGGCAGCTGACATTGGGGAAATGGTGAGAGGTGATGAGCCACAGTTGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004576954.1 True 395 lncRNA 0.47 3 13009928 13021871

Neighbor

gene id symbol gene type direction distance location
ek1 ek1,LOC108256132,LOC108434961,LOC107677298,LOC107697673,LOC107729659 coding downstream 355819 12569775 ~ 12654109 (-)
topbp1 topbp1,LOC107722031 coding downstream 952501 12032654 ~ 12057427 (-)
tmem108 LOC107589950 coding downstream 985018 11953616 ~ 12024910 (-)
pou6f2 pou6f2,LOC107691427,LOC107748311,LOC107589952,LOC107718921 coding downstream 1134811 11782378 ~ 11875117 (-)
otulina yae1d1 coding downstream 1243416 11763419 ~ 11766512 (-)
ezh2 ezh2,LOC107727220 coding upstream 22452 13044323 ~ 13061701 (-)
pdia4 pdia4,LOC107727231,LOC107686698,LOC107741760 coding upstream 45379 13067250 ~ 13077326 (-)
LOC113541106 NA coding upstream 58234 13080105 ~ 13129036 (-)
LOC113541320 bmi1,LOC107686702,LOC107727233 coding upstream 117786 13139657 ~ 13152923 (-)
mllt10 mllt10 coding upstream 166038 13187909 ~ 13258145 (-)
G331274 NA non-coding downstream 316218 12691960 ~ 12693710 (-)
G331188 NA non-coding downstream 507626 12501959 ~ 12502302 (-)
G331142 NA non-coding downstream 794677 12214363 ~ 12215251 (-)
G331123 NA non-coding downstream 855294 12151366 ~ 12154634 (-)
G331122 NA non-coding downstream 859424 12149591 ~ 12150504 (-)
G331423 NA non-coding upstream 43942 13065813 ~ 13066670 (-)
G331516 NA non-coding upstream 139821 13161692 ~ 13198744 (-)
G331534 NA non-coding upstream 229142 13251013 ~ 13251562 (-)
G331535 NA non-coding upstream 238805 13260676 ~ 13261243 (-)
G331536 NA non-coding upstream 240466 13262337 ~ 13262570 (-)
LOC113541288 NA other downstream 331990 12676545 ~ 12677938 (-)
cdv3 cdv3 other downstream 1013228 11944054 ~ 11996700 (-)
G330379 NA other downstream 1926777 11082268 ~ 11083151 (-)
ackr4b ackr4 other downstream 2079153 10923126 ~ 10930775 (-)
G330185 NA other downstream 2486665 10522732 ~ 10523263 (-)
LOC113541105 NA other upstream 735787 13757658 ~ 13762615 (-)
LOC113541102 msc other upstream 1911124 14932995 ~ 14937404 (-)
LOC113541115 kcnb2,si:dkey-192j17.1,LOC107657825,LOC107560266,LOC108426548,LOC107754205,LOC107589933 other upstream 1940966 14962837 ~ 15065810 (-)
sec61g NA other upstream 2593627 15615498 ~ 15618842 (-)
cpa6 cpa6,LOC106579545 other upstream 3259400 16281271 ~ 16312916 (-)

Expression


Co-expression Network