LOC117595778


Basic Information

Item Value
gene id LOC117595778
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13258456 ~ 13260558 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004576955.1
aagcttttattcatttttattagtgtataagagaacaaacacacactgaatccTCATACACCCTCTGCTtctttatttactgcattatggtgggaggaaaccggagaacccggaggaaacccatgtggacataAGAAGAACAAGTGAAGAATAAAGAACCTGAGAAGATAGCTGTCCATATGATGGAACAAACCAGAAGCAGACATACTGCAGATACTGGTGAAATTTTGTACTGACGATGACAATAGTGAACAAATTAGTGATCACTGATCTTGCTCCTGGAAATCCATCTTCCTACAGAATTCAGGGCTGAATTGCATAATCAAGTAGACTGATAATCTGGAGCAGGTGTGTTTACTTATCAGGATTTTTGGGGAGAAAATTCCAGACAGCATAGAATGTCAGACGAAATAGCTGAGTTTAGGCACATAGGGGTCATTTATGGCAATGGCAAATGTATTGTAACTCAGCAGTCACATTTATGTTCATGACCTTTGGGAGCTGAGCCAAAATGACCCAAATTCAACTAAACATATCTACTACTTGTCTGGCATTCCAATTAGTGTAGAGTGGTCCATACCATg
>XR_004576956.1
GGTAGCAGGAGCACAGAAGCAGGCCTCGGAGTGtttaaggacacacacactgaatcctCATACACCCTCTGCTtctttatttactgcattatagtaagcttttattcatttttattagtgtataagagaacaaacacacactgaatccTCATACACCCTCTGCTtctttatttactgcattatggtgggaggaaaccggagaacccggaggaaacccatgtggacataAGAAGAACAAGTGAAGAATAAAGAACCTGAGAAGATAGCTGTCCATATGATGGAACAAACCAGAAGCAGACATACTGCAGATACTGGTGAAATTTTGTACTGACGATGACAATAGTGAACAAATTAGTGATCACTGATCTTGCTCCTGGAAATCCATCTTCCTACAGAATTCAGGGCTGAATTGCATAATCAAGTAGACTGATAATCTGGAGCAGGTGTGTTTACTTATCAGGATTTTTGGGGAGAAAATTCCAGACAGCATAGAATGTCAGACGAAATAGCTGAGTTTAGGCACATAGGGGTCATTTATGGCAATGGCAAATGTATTGTAACTCAGCAGTCACATTTATGTTCATGACCTTTGGGAGCTGAGCCAAAATGACCCAAATTCAACTAAACATATCTACTACTTGTCTGGCATTCCAATTAGTGTAGAGTGGTCCATACCATg

Function

GO:

id name namespace
GO:0044260 cellular macromolecule metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004576955.1 False 584 lncRNA 0.40 3 13258642 13260558
XR_004576956.1 True 679 lncRNA 0.41 3 13258456 13260558

Neighbor

gene id symbol gene type direction distance location
cul1b cul1,LOC107686696,LOC107595130,LOC107727219,LOC107741709,LOC107695409 coding upstream 215940 13021167 ~ 13042516 (+)
LOC113541231 cntnap2,cntnap2a,LOC108256453,LOC108256478,LOC108256479 coding upstream 243347 12766560 ~ 13015109 (+)
ccl34b.4 LOC100304628 coding upstream 545805 12710626 ~ 12712651 (+)
LOC113541349 LOC108256200 coding upstream 550453 12706939 ~ 12708003 (+)
hs6st1b hs6st1b,LOC108256600,LOC108434959,LOC107558548,LOC107697682,LOC107677314,LOC107729660,LOC107590258,LOC106579591 coding upstream 759410 12428457 ~ 12499046 (+)
skida1 skida1 coding downstream 14102 13274660 ~ 13278025 (+)
armc3 armc3 coding downstream 61779 13322337 ~ 13334525 (+)
msrb2 msrb2,LOC107735060 coding downstream 75780 13336338 ~ 13341661 (+)
c8g NA coding downstream 83188 13343746 ~ 13350216 (+)
klhl15 klhl15,LOC107727232,LOC107695400,LOC107686713 coding downstream 113006 13373564 ~ 13379652 (+)
G331441 NA non-coding upstream 68501 13187836 ~ 13189955 (+)
G331349 NA non-coding upstream 193009 13064703 ~ 13065447 (+)
G331348 NA non-coding upstream 196797 13061335 ~ 13061659 (+)
G331345 NA non-coding upstream 201215 13056518 ~ 13057241 (+)
G331344 NA non-coding upstream 203937 13054285 ~ 13054519 (+)
G331480 NA non-coding downstream 3791 13264349 ~ 13264586 (+)
G331482 NA non-coding downstream 8869 13269427 ~ 13269642 (+)
G331486 NA non-coding downstream 13185 13273743 ~ 13274041 (+)
G331487 NA non-coding downstream 13569 13274127 ~ 13274411 (+)
G331468 NA non-coding downstream 26889 13287447 ~ 13290399 (+)
G331476 NA other upstream 40 13257894 ~ 13258416 (+)
G331263 LOC108256200,LOC100304628 other upstream 545778 12706939 ~ 12712678 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other upstream 1101669 12062332 ~ 12156787 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other upstream 1509897 11717415 ~ 11748559 (+)
acad11 acad11,LOC107715568,LOC104947469 other upstream 2274247 10874209 ~ 10984209 (+)
stau2 stau2,LOC107691439 other downstream 1873795 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other downstream 1991077 15251635 ~ 15265895 (+)
G332636 NA other downstream 2305617 15566175 ~ 15566663 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 3839606 17100164 ~ 17110027 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other downstream 4024524 17285082 ~ 17302004 (+)

Expression


Co-expression Network