LOC117595781


Basic Information

Item Value
gene id LOC117595781
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 9472616 ~ 9482817 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004576957.1
ACCTTGTGTGTTTAAAGCGTGTAACATTCCGAACGTTTCAGTGTTCGGGTTTTGtgatcacattaaaaaaatctcctgAGCACCGGCAGGTGGAGACACTGCTGCACACAACCTGCAACTCTTCCCTTCGTCTCTGAGCCTCATGGCCGCTGCTGGTGCTGTGCTTGTGACACCGGGTTGCTCCTGACCAGCTGCAGCCGGGAGGAAATGTTTGTCTTCAGTTTCTATCAATCATCAGCAGTTCAAACAGCACCAGCCTGCCTTGGGGTCACGTCAGCCTAAAAACTGTGAAAGCTGCTGTAGATCACTGGAGAGAAGTACCTCAGTCCCTCAAAACACTACACCTCTGTATGAAAGGCAAAGAGCTGATGTAAGAAAAGTGCAACTTGTTTTTCAGACTGGAAGGAGTACATGGAAGTACAAAGAACCAGTCAGATTTCAACCACAATCCTGAAGATTGTGTCCAGAAAAGTGTATCAGACACTCTATCTATCTCCATAGAGCTCACAGTACTCCACAGCAAACTATAAGAGCCATCCCTGAGTACAGGAGCACTTCCATCACTCCTTGACTTACAAGAAACTGACTCTCTGGGACTAAACTTTCCCTTTGGTGTTTGTATTCATGCTGGGCAACTGCTTCACTATATAAAGTATAGTGGTGGCAAGtaatactacatactgtatatgcacctatcaaatataacattaaaaccactgacaggtgacatgaataacattgattatctcattacaatggcacctgacAAGGGGTGGGATTGGAAGTAGGAAATATGGGCAagcatacactgcaaaaaatgacatcttattaagtggaaataccttgaatatagtcaaattgatCTAGTAGTTCCTATTATAAGTttgcaataaaccaaatataagattattaaacctatttcaagCCATTCGTACTCAAGCTTGAAACagttctactggcagataattttactcTTTTTTAAGCAGTTAATCCTGAAAAGAAGCAacattatctgccaatagaataagaaaactacaagaaataatcagaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004576957.1 True 1052 lncRNA 0.41 3 9472616 9482817

Neighbor

gene id symbol gene type direction distance location
tmem14ca tmem14c,tm14c,tmem14ca,LOC107671380 coding upstream 21273 9438298 ~ 9451343 (+)
eef1e1 eef1e1,LOC107664672,LOC107572674,LOC107730010 coding upstream 57234 9400242 ~ 9415382 (+)
slc35b3 slc35b3,LOC107730012,LOC107667423 coding upstream 123110 9333115 ~ 9349506 (+)
ofcc1 LOC108256210 coding upstream 284540 9082979 ~ 9188076 (+)
tfap2a tfap2a,LOC107664660 coding upstream 467396 8993786 ~ 9005220 (+)
sycp2l sycp2l,LOC108261788 coding downstream 27791 9510608 ~ 9562189 (+)
LOC113541200 dnajc13 coding downstream 699974 10182791 ~ 10341901 (+)
tmx3b tmx3,LOC107693466 coding downstream 862506 10345323 ~ 10426436 (+)
lztfl1 lztfl1,LOC107701792 coding downstream 958140 10440957 ~ 10477542 (+)
ccr9b LOC108256084,LOC108442972 coding downstream 1065911 10548728 ~ 10552018 (+)
G329522 NA non-coding upstream 119883 9352150 ~ 9352733 (+)
G329523 NA non-coding upstream 136808 9335186 ~ 9335808 (+)
G329361 NA non-coding upstream 499029 8973237 ~ 8973587 (+)
G329354 NA non-coding upstream 527060 8942878 ~ 8945556 (+)
G329288 NA non-coding upstream 723583 8748820 ~ 8749033 (+)
G329581 NA non-coding downstream 8457 9491274 ~ 9491545 (+)
G329564 NA non-coding downstream 82876 9565693 ~ 9568672 (+)
G329685 NA non-coding downstream 92572 9575389 ~ 9575704 (+)
G329689 NA non-coding downstream 117791 9600608 ~ 9600840 (+)
LOC117595805 NA non-coding downstream 212842 9695659 ~ 9714739 (+)
bmp6 bmp6 other upstream 549823 8851404 ~ 8922793 (+)
LOC113532648 ptprh,LOC108256157 other upstream 651305 8768745 ~ 8821311 (+)
G329111 LOC108426559,LOC103029568,LOC107664665,LOC108256430,LOC107550021,LOC107755710,LOC107742253,LOC107655802 other upstream 806780 8615073 ~ 8665836 (+)
LOC113532774 vps13b other upstream 922378 8388187 ~ 8550238 (+)
osr2 osr2,LOC106591507 other upstream 1093720 8372685 ~ 8378896 (+)
gnal gnal,LOC108426578,LOC106590334,LOC107702493,LOC106579638,LOC107726148 other downstream 138862 9621679 ~ 9687491 (+)
G329779 NA other downstream 308867 9791684 ~ 9792733 (+)
cdh19 LOC108256684 other downstream 373365 9856182 ~ 9938468 (+)
G330038 NA other downstream 948516 10431333 ~ 10432864 (+)
gli3 gli3,LOC108444237 other downstream 1112313 10595130 ~ 10768360 (+)

Expression


Co-expression Network