LOC117595782


Basic Information

Item Value
gene id LOC117595782
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19521365 ~ 19522260 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004576958.1
aatcaGGCAGGTCTCGACTCAGTTTGTATGCGCGATCAAGTTGGGTTGAGATATAAAGTACGCAGCTGTATAGGACACTCTGTACATGTGCACGTCCACAACACGTGTTTTTACAGgatcgcTCTGGATCCTGGTCCTTtccccgggaacactgggcacgggGCAGGAGAActcaccctgcacacacacacacactcttctagGGGCAATGTAGCATAACCAAATCCAGGTATGTCACttctgtgggaggaaaccagagaacctgaaggaaacccaatACCAGGAgcacatgtgaaactccacacagacccGGGATCGAGCCGGAGGAAGccggagctgtgaggcaaaAATGCCGCTCACTGCAAAAATACGTACGAACATATTCGTTTATTTCGAGCCATTATAGCTGGATGTTCCACTCGTCCAGATGTAGACTGGTTTCTTATTCACATCActttctgatttttcttttaaaattgcagTTAGATTAAAGTGAACATTGTTTAA

Function

GO:

id name namespace
GO:0016769 transferase activity, transferring nitrogenous groups molecular_function
GO:0008483 transaminase activity molecular_function

KEGG:

id description
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004576958.1 True 507 lncRNA 0.47 2 19521365 19522260

Neighbor

gene id symbol gene type direction distance location
pcyt1ba pcyt1b,LOC107721854,LOC107590340,LOC107586799,LOC107705205 coding upstream 14829 19498302 ~ 19506536 (+)
arxa arx,arxa,LOC107586699,LOC107663641 coding upstream 84605 19429768 ~ 19436760 (+)
ndufb4 ndufb4 coding upstream 125475 19391973 ~ 19395890 (+)
LOC117595802 NA coding upstream 184715 19335026 ~ 19336650 (+)
LOC117595764 NA coding upstream 186085 19332174 ~ 19335280 (+)
mtmr6 mtmr6,LOC107721921,LOC107705267,LOC107590218 coding downstream 57050 19579310 ~ 19593452 (+)
amer2 amer2 coding downstream 78305 19600565 ~ 19603770 (+)
LOC113541258 LOC108256477,LOC108439743,LOC107705271,LOC107721848,LOC107590344,LOC107586729,LOC107671347 coding downstream 217797 19740057 ~ 19750055 (+)
LOC113541169 klhl34 coding downstream 361787 19884047 ~ 19887557 (+)
sh3kbp1 sh3kbp1,LOC107590295 coding downstream 528476 20050736 ~ 20112391 (+)
G334733 NA non-coding upstream 169613 19345889 ~ 19351752 (+)
G334575 NA non-coding upstream 588114 18933049 ~ 18933251 (+)
G334573 NA non-coding upstream 588655 18932502 ~ 18932710 (+)
G334386 NA non-coding upstream 667362 18761089 ~ 18854003 (+)
G334371 NA non-coding upstream 794635 18688759 ~ 18726730 (+)
G334806 NA non-coding downstream 38842 19561102 ~ 19589060 (+)
G334888 NA non-coding downstream 182425 19704685 ~ 19707006 (+)
G335214 NA non-coding downstream 244210 19766470 ~ 19766826 (+)
G335215 NA non-coding downstream 245203 19767463 ~ 19768343 (+)
G335243 NA non-coding downstream 302443 19824703 ~ 19824911 (+)
dap dap,LOC107705232,LOC107701690,LOC107654217 other upstream 93429 19317857 ~ 19427936 (+)
LOC117595806 zfhx4,LOC107590192 other upstream 773888 18712048 ~ 18747477 (+)
G334373 NA other upstream 803412 18693149 ~ 18717953 (+)
mcmdc2 mcmdc2 other upstream 1035356 18467878 ~ 18486009 (+)
mtfr1 mtfr1 other upstream 1198070 18315354 ~ 18323295 (+)
G334838 NA other downstream 53851 19576111 ~ 19577073 (+)
cip2a kiaa1524 other downstream 114608 19636868 ~ 19703804 (+)
si:ch73-264p11.1 sh21b other downstream 156221 19678481 ~ 19683870 (+)
G335231 NA other downstream 266323 19788583 ~ 19789058 (+)
smpx smpx,LOC107590224,LOC107663668,LOC107721880,LOC107705278,LOC107671350 other downstream 348121 19870381 ~ 19882836 (+)

Expression


Co-expression Network