Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117595785 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 9912522 ~ 9913573 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_004576963.1 | True | 826 | lncRNA | 0.43 | 4 | 9912522 | 9913573 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113532851 | NA | coding | downstream | 92989 | 9796334 ~ 9819533 (-) |
| mppe1 | mppe1 | coding | downstream | 194956 | 9687555 ~ 9717566 (-) |
| elovl2 | elovl2,LOC101268971 | coding | downstream | 340317 | 9552595 ~ 9572205 (-) |
| gcm2 | gcm2,LOC107664656,LOC107707735,LOC107654664,LOC107552658 | coding | downstream | 402333 | 9504137 ~ 9510189 (-) |
| mak | mak | coding | downstream | 440110 | 9451374 ~ 9472412 (-) |
| LOC113541360 | NA | coding | upstream | 371261 | 10284834 ~ 10284937 (-) |
| si:dkey-12l12.1 | NA | coding | upstream | 1062201 | 10975774 ~ 10980139 (-) |
| LOC113541107 | NA | coding | upstream | 1192841 | 11106414 ~ 11109555 (-) |
| prlh2 | prlh | coding | upstream | 1395181 | 11308754 ~ 11310736 (-) |
| zfand1 | zfand1,LOC107739158,LOC107681457,LOC107554718 | coding | upstream | 1441599 | 11355172 ~ 11368763 (-) |
| G329810 | NA | non-coding | downstream | 64958 | 9847017 ~ 9847564 (-) |
| G329778 | NA | non-coding | downstream | 121638 | 9790661 ~ 9790884 (-) |
| G329771 | NA | non-coding | downstream | 143947 | 9766077 ~ 9768575 (-) |
| G329766 | NA | non-coding | downstream | 172511 | 9739264 ~ 9740011 (-) |
| G329765 | NA | non-coding | downstream | 176366 | 9735797 ~ 9736156 (-) |
| G329934 | NA | non-coding | upstream | 225130 | 10138703 ~ 10138957 (-) |
| G329941 | NA | non-coding | upstream | 242357 | 10155930 ~ 10156285 (-) |
| G329943 | NA | non-coding | upstream | 246194 | 10159767 ~ 10159983 (-) |
| G329952 | NA | non-coding | upstream | 252502 | 10166075 ~ 10166604 (-) |
| LOC113541201 | NA | non-coding | upstream | 265635 | 10179208 ~ 10182831 (-) |
| sec61b | sec61b,LOC102796100 | other | downstream | 2526175 | 7378731 ~ 7386347 (-) |
| G328342 | LOC108256401 | other | downstream | 2850094 | 7056794 ~ 7062428 (-) |
| arhgap33 | LOC108256528,LOC108438098,LOC106605587 | other | downstream | 3528934 | 6256403 ~ 6383588 (-) |
| zfpm2a | zfpm2,zfpm2a,LOC107714317,LOC107592441 | other | downstream | 3934143 | 5829474 ~ 5978379 (-) |
| ubr5 | ubr5 | other | downstream | 4934995 | 4932155 ~ 4977527 (-) |
| LOC113541109 | NA | other | upstream | 237924 | 10151497 ~ 10156800 (-) |
| G330185 | NA | other | upstream | 609159 | 10522732 ~ 10523263 (-) |
| ackr4b | ackr4 | other | upstream | 1009553 | 10923126 ~ 10930775 (-) |
| G330379 | NA | other | upstream | 1168695 | 11082268 ~ 11083151 (-) |
| cdv3 | cdv3 | other | upstream | 2030481 | 11944054 ~ 11996700 (-) |
