LOC117595795


Basic Information

Item Value
gene id LOC117595795
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 9985422 ~ 9987589 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004576972.1
CTGATTTTGCCAAGTGGTTGCTGTCCTGAGACCAACATATTTCATGATGTTCTTGGGACAACAACTGCGCGAGCCAATCAACGTTTATGATGTCATCACCGTGTGCCGTGCTGCTGCCGACTCCgccaaaattttaaaaaaaaagcaataacgGCAAAACCCCTCTGTCAAGCACGCAGGTTACAAGTTTCTTCCACCGTTTAAAATACCAGTTCCTCTGTGGTATCAGAAACCGTAGACTGGATCACCTCATTGATGAGCTACTAAACAGGACTGACAAGTATTTCAACATAATACAGGATTTGCAGTGGAACCTatacaaaatgaaattgaaGACAAAGACAGGCCTAGTTCAACTATCAGGAAGCTGGAAAGCAAACTGAAGACTCTACAAACATGGGAGAGAATTTCTGAGGATATTGCCCATAAAGTCAATGAACTGGAAGTGcaaataaaggaagaaaattcAAACAATAAAAGATTTAAGCGGCATTGCCTCAGAGACAAGGACAGATATCACATCAAGTTTTCTATCAAGTtgagaagaaaacacaaagcaatcGGTACAAAACTCAAGGGTTAAAATTAAGTACTTTTAttcaagtgcattttttttttttttttgccattttatcaAACTTTGCAATTGTTCTTCACTACATCTGGAGTGCTCCAGTAATCATTAAGTTACCATCATTAAAAAGCTTGTATTTAGTCACCTGTGCTTTTAACTGTAacgtaaaattaaataaaaatcaaatcaaatgtca

Function

GO:

id name namespace
GO:0009790 embryo development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004576972.1 True 770 lncRNA 0.37 2 9985422 9987589

Neighbor

gene id symbol gene type direction distance location
sycp2l sycp2l,LOC108261788 coding upstream 423233 9510608 ~ 9562189 (+)
tmem14ca tmem14c,tm14c,tmem14ca,LOC107671380 coding upstream 534079 9438298 ~ 9451343 (+)
eef1e1 eef1e1,LOC107664672,LOC107572674,LOC107730010 coding upstream 570040 9400242 ~ 9415382 (+)
slc35b3 slc35b3,LOC107730012,LOC107667423 coding upstream 635916 9333115 ~ 9349506 (+)
ofcc1 LOC108256210 coding upstream 797346 9082979 ~ 9188076 (+)
LOC113541200 dnajc13 coding downstream 195202 10182791 ~ 10341901 (+)
tmx3b tmx3,LOC107693466 coding downstream 357734 10345323 ~ 10426436 (+)
lztfl1 lztfl1,LOC107701792 coding downstream 453368 10440957 ~ 10477542 (+)
ccr9b LOC108256084,LOC108442972 coding downstream 561139 10548728 ~ 10552018 (+)
prpf4bb prpf4b,prpf4bb,LOC108442973,LOC107738454,LOC107598186,LOC107670278,LOC107554722,LOC107749644 coding downstream 823017 10810606 ~ 10828391 (+)
G329797 NA non-coding upstream 175675 9809474 ~ 9809747 (+)
G329721 NA non-coding upstream 249391 9735801 ~ 9736031 (+)
G329720 NA non-coding upstream 251283 9733935 ~ 9734139 (+)
G329719 NA non-coding upstream 251916 9733106 ~ 9733506 (+)
G329718 NA non-coding upstream 252695 9732462 ~ 9732727 (+)
G329933 NA non-coding downstream 151166 10138755 ~ 10138977 (+)
G329942 NA non-coding downstream 170766 10158355 ~ 10158585 (+)
G329949 NA non-coding downstream 176330 10163919 ~ 10164120 (+)
G329964 NA non-coding downstream 187040 10174629 ~ 10186937 (+)
G329975 NA non-coding downstream 222334 10209923 ~ 10212430 (+)
cdh19 LOC108256684 other upstream 46954 9856182 ~ 9938468 (+)
G329779 NA other upstream 192689 9791684 ~ 9792733 (+)
gnal gnal,LOC108426578,LOC106590334,LOC107702493,LOC106579638,LOC107726148 other upstream 297931 9621679 ~ 9687491 (+)
bmp6 bmp6 other upstream 1062629 8851404 ~ 8922793 (+)
LOC113532648 ptprh,LOC108256157 other upstream 1164111 8768745 ~ 8821311 (+)
G330038 NA other downstream 443744 10431333 ~ 10432864 (+)
gli3 gli3,LOC108444237 other downstream 607541 10595130 ~ 10768360 (+)
acad11 acad11,LOC107715568,LOC104947469 other downstream 886620 10874209 ~ 10984209 (+)
G330257 NA other downstream 985675 10973264 ~ 10974915 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other downstream 1729826 11717415 ~ 11748559 (+)

Expression


Co-expression Network