LOC117595798


Basic Information

Item Value
gene id LOC117595798
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 9049240 ~ 9050902 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004576976.1
ttaCTTCATACtagtcagggttgcggtggatccggagccagTTCCAACAACACAGGGAGCAAGctgctcccGTTGTTGGCTCTGTGAAAGCATGCCAGTTTGGACTCAGGTGCATCAGTGTTCCAGAGTAGGACAACCTTGGCATTCCAGGCAGCTTTTGGTGTGTTGTGCATATTGGGAGGCCTTCATTACATTGGATTGACAATAACCTGCTCCAGGTGCCACTAGTTCTCTCCTAGTTTACTGAGAATATCCACCAGAATGTATCTAGGGAGCTCATCTACCAGACACAGGTCCTTAGCACTAGTCCACATGTTGCAATCTTCAGGCCATGTATGTGTTAAATGGCTATATTCAGTGGTCTTGTTCACTGTGTATTTTATGAATTGGAAATAATCCTTGAGATAAACACACTGtccttaaacaaacaaacaaac

Function

GO:

id name namespace
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0042254 ribosome biogenesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004576976.1 True 437 lncRNA 0.45 3 9049240 9050902

Neighbor

gene id symbol gene type direction distance location
bloc1s5 bloc1s5 coding downstream 82065 8962772 ~ 8967175 (-)
txndc5 txndc5 coding downstream 94046 8944385 ~ 8955194 (-)
si:dkey-197c15.6 NA coding downstream 212409 8830847 ~ 8836831 (-)
cavin1b LOC108426559,LOC103029568,LOC108256430,LOC107664665,LOC107742253,LOC107550021,LOC107655802,LOC107755710 coding downstream 383385 8652432 ~ 8665855 (-)
rpgrip1 NA coding downstream 402731 8589264 ~ 8646509 (-)
mak mak coding upstream 400472 9451374 ~ 9472412 (-)
gcm2 gcm2,LOC107664656,LOC107707735,LOC107654664,LOC107552658 coding upstream 453235 9504137 ~ 9510189 (-)
elovl2 elovl2,LOC101268971 coding upstream 501693 9552595 ~ 9572205 (-)
mppe1 mppe1 coding upstream 636653 9687555 ~ 9717566 (-)
LOC113532851 NA coding upstream 745432 9796334 ~ 9819533 (-)
G329461 NA non-coding downstream 38575 9010461 ~ 9010665 (-)
G329447 NA non-coding downstream 106882 8942137 ~ 8942358 (-)
G329438 NA non-coding downstream 128227 8920280 ~ 8921013 (-)
G329404 NA non-coding downstream 197928 8847485 ~ 8851312 (-)
LOC117595776 NA non-coding downstream 210246 8823190 ~ 8838994 (-)
LOC117595799 NA non-coding upstream 6313 9057215 ~ 9081783 (-)
G329531 NA non-coding upstream 298564 9349466 ~ 9349837 (-)
G329686 NA non-coding upstream 524482 9575384 ~ 9575695 (-)
G329722 gnal,LOC107742053,LOC107702493 non-coding upstream 570809 9621711 ~ 9622672 (-)
G329756 NA non-coding upstream 667260 9718162 ~ 9719292 (-)
sec61b sec61b,LOC102796100 other downstream 1662893 7378731 ~ 7386347 (-)
G328342 LOC108256401 other downstream 1986812 7056794 ~ 7062428 (-)
arhgap33 LOC108256528,LOC108438098,LOC106605587 other downstream 2665652 6256403 ~ 6383588 (-)
zfpm2a zfpm2,zfpm2a,LOC107714317,LOC107592441 other downstream 3070861 5829474 ~ 5978379 (-)
ubr5 ubr5 other downstream 4071713 4932155 ~ 4977527 (-)
LOC113541109 NA other upstream 1100595 10151497 ~ 10156800 (-)
G330185 NA other upstream 1471830 10522732 ~ 10523263 (-)
ackr4b ackr4 other upstream 1872224 10923126 ~ 10930775 (-)
G330379 NA other upstream 2031366 11082268 ~ 11083151 (-)
cdv3 cdv3 other upstream 2893152 11944054 ~ 11996700 (-)

Expression


Co-expression Network