LOC117595800


Basic Information

Item Value
gene id LOC117595800
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19414228 ~ 19416072 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004576978.1
TCAGCGAGGGCGCTGTTTAATGACTCCAGAATAATTCCTTCCTCATTAGCGTGAGCTCAGAGGATCCACCAGGGCTTGAACCACTAGAGCATGGTGTGCCGCAACAGTCTTTATCTCCGTATTATTGCATTTGCATAACATTACAGCCCccgcatgagagagagagagagagagagagagtgagtgagtgagtccaCTCCGAAAGGCCGCCTGCACTTCATTTTAAAAGGGTATAGTGGACGTCCCTGCAAATCTAATCAGAAGTAAGTGGAGGTGGTGGCGATGCTGCTGTGGTAGGAGGCGAGTGCACACAATAAGTGACATGCAGAGGAAGAACTTTCCAGAGTTATTAGAGTCATTAGAGCACCTTTTAAGTAATATTACAAAGACAAACTCTTCATATCAGCCCTTTAAATTCATGAGAGTcgtgatttatttctgtatgttgacgtgtttccttttgaaacaggatgTCGGAGTGACAGTGTGTTGAAGAAGGACTGATTTACGCAACGGCCAATAGCTCGAGTTTGAGATACACCATGCCGCACCTCTAAACACACCTGATTAGCAAACTAGAAATCCTGACTCTCTCCACGCTCTCATACGTGATATCTATATCTGATCTTCGGGGCAGGATTCCAATCTAACAGCCTGATCTGATGAAAGGAAAAGCAAGCCATCCAGGAGATCAATTTCCATAGACTGGCTGGAGATATTTTCCGTCATTAGGCTTTTGAGCACAGCCTCTAAACTGCAGGCCAGCGGGGGACTGGATGCAGCTGCACGCTTCACTCAGGGTTTATTCCTGCCTCGCTATAAGAAACATGCTGGATGTGGGTCACTGCATGAAAACGGTACCTTCTCTATCCTCGCAATAACATCACTATATTAAACactccatttaaaaaataagtccCGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004576978.1 True 923 lncRNA 0.45 3 19414228 19416072

Neighbor

gene id symbol gene type direction distance location
hgd hgd,LOC107705246,LOC107721894 coding downstream 3013 19395899 ~ 19411215 (-)
ropn1l ropn1l coding downstream 22695 19382488 ~ 19391533 (-)
ankrd33ba LOC108256627 coding downstream 36355 19363399 ~ 19377873 (-)
pex2 pex2 coding downstream 598154 18808594 ~ 18816074 (-)
cops5 cops5,LOC107590195,LOC107705241,LOC107663714 coding downstream 912146 18496163 ~ 18502082 (-)
pola1 pola1,LOC107705179,LOC107666635,LOC107721886,LOC107663691 coding upstream 23691 19439763 ~ 19489383 (-)
LOC113541094 pola1 coding upstream 73246 19489318 ~ 19496957 (-)
slc51a LOC108256565 coding upstream 106543 19522615 ~ 19531363 (-)
zdhhc20b LOC108438268,LOC108256609,LOC107705266,LOC107586722,LOC107590215,LOC107663708 coding upstream 124711 19540783 ~ 19554793 (-)
phldb2b LOC108256156,LOC108438454,LOC107586724,LOC107721837 coding upstream 192965 19609037 ~ 19663355 (-)
G335103 NA non-coding downstream 9339 19359557 ~ 19404889 (-)
G335099 NA non-coding downstream 53490 19317859 ~ 19360738 (-)
LOC117595792 NA non-coding downstream 338962 19070338 ~ 19075266 (-)
G334602 NA non-coding downstream 453175 18960847 ~ 18961053 (-)
G334574 NA non-coding downstream 481388 18932629 ~ 18932840 (-)
G335149 NA non-coding upstream 134968 19551040 ~ 19551530 (-)
G335150 NA non-coding upstream 144906 19560978 ~ 19564462 (-)
G335230 NA non-coding upstream 356781 19772853 ~ 19773057 (-)
G335232 NA non-coding upstream 372511 19788583 ~ 19789058 (-)
G335404 NA non-coding upstream 463820 19879892 ~ 19902336 (-)
pkia pkia,LOC107666628,LOC107705234 other downstream 398373 19005498 ~ 19015855 (-)
mybl1 mybl1,LOC107663687,LOC107590196 other downstream 894023 18437514 ~ 18520205 (-)
zmp:0000000991 NA other downstream 1482414 17916084 ~ 17931814 (-)
c22h11orf65 c23h11orf65 other downstream 1497672 17909324 ~ 17916556 (-)
LOC113541127 LOC108256571 other downstream 1505416 17907584 ~ 17908812 (-)
pdk3a pdk3,pdk3a,LOC107586717,LOC107705263,LOC107656160,LOC107663620,LOC107590342,LOC107721912 other upstream 91016 19507088 ~ 19521331 (-)
nup58 nup58,LOC107721897,LOC107590217 other upstream 139069 19555141 ~ 19579031 (-)
G335165 amer2 other upstream 184655 19600727 ~ 19603693 (-)
cnksr2a cnksr2,cnksr2a other upstream 472967 19889039 ~ 19967804 (-)
G335523 NA other upstream 763340 20179412 ~ 20182412 (-)

Expression


Co-expression Network