LOC117595809


Basic Information

Item Value
gene id LOC117595809
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13958024 ~ 13962184 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004576995.1
CTGAGACGCACAGTCTTAGTAATTAAGTGACaataagttataaaaaaaacatacatacgTGGTGGATGACCCCAGAAGATTTCTTTCCACAAGTCTGTGATAATGTGGCCAGATGCCAGTGAGACCTGAGTCCAGACAGTCCTGAGGAGTCCACTTGCCCCAAGCAACTGAAGTatatATTTAGCAGATTAAGCCCACTTACAAAGAAAGCCACTTGTTGAGATCTAAATCGAGGCATAAAGTTAAGGAAATAGCTAATATGATGCAGTGGCACCCTATGACATCAATCAGAGTGAAAGAAACAAAGGCAGAAGTGCTGAATCCCGTGGAGGTTTAATAGCTGTTGTTTGTGTCTCGGCGAATGTGGAGACTATTATTACGGAGGTAAATCTCATCCTTCTGTGCCTCTGTAAACCCAGCGAGCCGACAGGGATTTGTCTGGGCATGAGGACAGAGCCAAGCAATTTATTTCCACGATTTGACAAAACCTTCGGAGCGGTAGAACAATTACTTTCACTCCCTCTGCACTGCATAAGACCTCAGGGTTGAGAAATCGAGTGACTCGGCAGCTCTAATCAGAGGTTAAAACGGCAACAAGGATCGTCAGGTGCGGTTTGGTTCCTCGTTTCCCCAAATGAGTGCTGAGAGGATCTGAGATGTGGCCTTCAAAGAAAGCTTTAATGAGTCTGAAGACATCAAGGGGATGAAAGTCATTGACTTTTTATGGAATAAAGAATAACAGATGGACATTTATTGCATAATACATTATAACGTTAAATGTTACAGTTATACTGCGGTACATCTCTGGTAACTGTAatatatttagattttaatttctGCAGTGAGACACATacttgaatgcttgattctgattggccagatggtgttgattcattttctaaagcAGCTTTTCTGACAATAGTACCAGCTGCAaggtctgtattaatgcactagttctatactatatattattgTCTCTGTTGTAATTCACAGGGATTTtttatggcagacactccacataaatggattaaaaaatgtgtaattgttgatttg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004576995.1 True 1053 lncRNA 0.40 3 13958024 13962184

Neighbor

gene id symbol gene type direction distance location
mtrr mtrr coding upstream 510276 13406164 ~ 13447748 (+)
cmbl cmbl coding upstream 561563 13386074 ~ 13396461 (+)
trnat-agu_17 NA coding upstream 572750 13385201 ~ 13385274 (+)
klhl15 klhl15,LOC107727232,LOC107695400,LOC107686713 coding upstream 578372 13373564 ~ 13379652 (+)
c8g NA coding upstream 607808 13343746 ~ 13350216 (+)
cbln2b cbln2,cbln2b,LOC107657802,LOC107596058,LOC107741967 coding downstream 13056 13975240 ~ 13980189 (+)
rttn rttn coding downstream 271860 14234044 ~ 14295771 (+)
cd226 NA coding downstream 335376 14297560 ~ 14309471 (+)
crispld1a LOC108256732 coding downstream 424777 14386961 ~ 14405762 (+)
jph1a LOC108256670 coding downstream 524786 14486970 ~ 14517787 (+)
G331502 NA non-coding upstream 575388 13380644 ~ 13382636 (+)
G331496 eif2s3,LOC102783563 non-coding upstream 595322 13361369 ~ 13362702 (+)
G331498 NA non-coding upstream 597006 13360280 ~ 13361018 (+)
G331468 NA non-coding upstream 667625 13287447 ~ 13290399 (+)
G331487 NA non-coding upstream 683613 13274127 ~ 13274411 (+)
G332111 NA non-coding downstream 725979 14688163 ~ 14703270 (+)
G332238 NA non-coding downstream 982807 14944991 ~ 14945212 (+)
G332248 NA non-coding downstream 993676 14955860 ~ 14956067 (+)
G332334 NA non-coding downstream 1103791 15065975 ~ 15113514 (+)
G332348 NA non-coding downstream 1239633 15201817 ~ 15202305 (+)
G331476 NA other upstream 699608 13257894 ~ 13258416 (+)
G331263 LOC108256200,LOC100304628 other upstream 1245346 12706939 ~ 12712678 (+)
prkag2a prkag2,prkag2a,LOC108256599,LOC108434244,LOC106590432,LOC106579597,LOC107729655,LOC107590261,LOC107757712 other upstream 1801237 12062332 ~ 12156787 (+)
ankha ankh,ankha,LOC108256444,LOC108434238,LOC107724566 other upstream 2209465 11717415 ~ 11748559 (+)
G330257 NA other upstream 2983109 10973264 ~ 10974915 (+)
stau2 stau2,LOC107691439 other downstream 1172169 15134353 ~ 15314968 (+)
si:ch73-173p19.2 LOC108256301 other downstream 1289451 15251635 ~ 15265895 (+)
G332636 NA other downstream 1603991 15566175 ~ 15566663 (+)
hhatlb hhatl,hhatlb,LOC108256744,LOC107585011,LOC107701661 other downstream 3137980 17100164 ~ 17110027 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other downstream 3322898 17285082 ~ 17302004 (+)

Expression


Co-expression Network