trnaa-agc_16


Basic Information

Item Value
gene id trnaa-agc_16
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18379942 ~ 18380014 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnaa-agc_16
GGGGAATTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTAGCGGGATCGATGCCCGCATTCTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaa-agc_16 True 73 tRNA 0.56 1 18379942 18380014

Neighbor

gene id symbol gene type direction distance location
trnaa-agc_15 NA coding upstream 568 18379302 ~ 18379374 (+)
dnajc5b dnajc5b,LOC107586796,LOC107663636,LOC107656153,LOC107721861 coding upstream 1746 18372722 ~ 18378196 (+)
bhlhe22 bhlhe22 coding upstream 162736 18214863 ~ 18217206 (+)
ythdf3 ythdf3,LOC107666630,LOC107705256 coding upstream 282027 18087647 ~ 18097915 (+)
lipib LOC108256469,LOC108438884,LOC107721863,LOC107705251,LOC107590204 coding upstream 396522 17973204 ~ 17983420 (+)
trim55b trim55,LOC107590338,LOC107663638 coding downstream 277 18380291 ~ 18390865 (+)
si:dkey-97a13.12 NA coding downstream 16213 18396227 ~ 18432150 (+)
rrs1 rrs1,LOC107590198,LOC107721889 coding downstream 40972 18420986 ~ 18423560 (+)
sgk3 sgk3,LOC107721888,LOC107663688,LOC107666631,LOC107705243,LOC107590197 coding downstream 73093 18453107 ~ 18467245 (+)
pign pign,LOC107663715,LOC107721925,LOC107666639,LOC107705240 coding downstream 123804 18503818 ~ 18523294 (+)
G334120 NA non-coding upstream 55057 18296643 ~ 18324885 (+)
G334077 NA non-coding upstream 176262 18203063 ~ 18203680 (+)
G334078 NA non-coding upstream 177037 18200395 ~ 18202905 (+)
G334032 NA non-coding upstream 271138 18085319 ~ 18108804 (+)
G334028 NA non-coding upstream 300572 18079151 ~ 18079370 (+)
G334209 NA non-coding downstream 55707 18435721 ~ 18437406 (+)
G334210 NA non-coding downstream 59135 18439149 ~ 18439446 (+)
G334211 mybl1 non-coding downstream 60241 18440255 ~ 18440656 (+)
G334219 NA non-coding downstream 120769 18500783 ~ 18530907 (+)
LOC113541128 NA non-coding downstream 163348 18543362 ~ 18681823 (+)
mtfr1 mtfr1 other upstream 56647 18315354 ~ 18323295 (+)
G333943 LOC108256468 other upstream 386928 17986762 ~ 17993014 (+)
pan3 pan3,LOC107705213 other upstream 583421 17761531 ~ 17796521 (+)
rnf6 rnf6,LOC106590444 other upstream 837555 17535944 ~ 17542387 (+)
G333388 csta,LOC108256407,LOC107654238,LOC107701640,LOC108256406,LOC108256405,LOC107591268 other upstream 1077938 17285082 ~ 17302004 (+)
mcmdc2 mcmdc2 other downstream 87864 18467878 ~ 18486009 (+)
G334373 NA other downstream 313135 18693149 ~ 18717953 (+)
LOC117595806 zfhx4,LOC107590192 other downstream 332034 18712048 ~ 18747477 (+)
dap dap,LOC107705232,LOC107701690,LOC107654217 other downstream 937843 19317857 ~ 19427936 (+)
G334838 NA other downstream 1196097 19576111 ~ 19577073 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnaa-agc-3 NA coding NC_048569.1 CM023223.2 61266697 ~ 61266769 (-)
eurasian perch (Perca fluviatilis) trnaa-agc_30 NA non-coding NC_053133.1 CM020930.1 15645358 ~ 15645430 (-)
tiger barb (Puntius tetrazona) trnam-cau_86 NA misc NC_056707.1 CM032076.1 5440197 ~ 5440268 (+)
tiger barb (Puntius tetrazona) trnaa-agc_29 NA coding NC_056722.1 CM032091.1 19503381 ~ 19503453 (+)
mexican tetra (Astyanax mexicanus) trnaa-agc_30 NA misc NW_019171985.1 APWO02001583.1 114541 ~ 114613 (-)