LOC113528266


Basic Information

Item Value
gene id LOC113528266
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 205480 ~ 210705 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU411849
TAGCGGATCCAGTGATCCAGCTGTGAGTAGCTCTCTCCCGCTGGATGCTGGTGTgtggacagttaatgacagctCTTACAGTTTTTTAAACTCCGTGATTAAAACTCTCACTGTTCTCTGCTCGTCTCATTGAGCAGGTTTATTAGCGACTCCGCTCGTTAGCCAGTTAGCTTAGCTCTGAGCTAGCCTCGCCTGCTTCGGAGATGTTTTGGAGCAGTTGTGTGTCTAATAAAGAAATGAAGAGCTTTAACATCCTTGTGATCCTGGTGCTGGTTTTGACAGtattGGTTTGTGCATCAGGTGATTATACGATGGCCAAACTGAACCAGACCGCTACGCTCCTCTGTACTGGTTCATGTCCTGGCTTAATGGAATGGACCCAGCCCCGTAACAAAGACATGCCTGTGGCTCGGTGTAATCAGACAGAATGCAGGCCAGAGAAGGGATATGAAATGTCTCATGAGCAGTACCTGAAGGGGAATCTGTCTCTCACCATCACTGCAGTAGATTACAGTAAGAGAACCTGGTACAAGTGTCGCTGTGATGGCCGAGACGTCTGTGACGTGAACCTTCGGATTGAGCCTCTTGAGCTTACCAGAAAGATGAAGCCTGGAGAACCCCTCTTCCTGGAACTGCCCATCACAGAGAACGTTAAGGTCACCTTTAACCAGAGCGGTGATGATGGCAGTCAGAGGTCTGTCCTAGTGTGTACAGCCGATGGTCGTAAACTTCAGTGTGACTCAGAGTATAAGAATAGAGCGTCGCTGAAGTCGTCTCTGACCCTGACTGAAGTGAAGGAGTCTGACAGAGGAGTGTACACTGTGCAGGACACTGAAAATGAAGAGGTCATAGCTACATACACTGTCACAGGGTCTAAACCAGAGCAGCCGGGTTCTGGAGCTGCGCTCGTGTCCCAGCCTCAATCTCGAGGACGCCGCAGTGTCTCTGaggaGAAGCCATGTCCAGACTGTAAGCAGGACAGAGCCATGCCAGCGTGGGGGATTAcactgatagtggtgca
>TU411850
TAGCGGATCCAGTGATCCAGCTGTGAGTAGCTCTCTCCCGCTGGATGCTGGTGTgtggacagttaatgacagctCTTACAGTTTTTTAAACTCCGTGATTAAAACTCTCACTGTTCTCTGCTCGTCTCATTGAGCAGGTTTATTAGCGACTCCGCTCGTTAGCCAGTTAGCTTAGCTCTGAGCTAGCCTCGCCTGCTTCGGAGATGTTTTGGAGCAGTTGTGTGTCTAATAAAGAAATGAAGAGCTTTAACATCCTTGTGATCCTGGTGCTGGTTTTGACAGtattGGTTTGTGCATCAGGTGATTATACGATGGCCAAACTGAACCAGACCGCTACGCTCCTCTGTACTGGTTCATGTCCTGGCTTAATGGAATGGACCCAGCCCCGTAACAAAGACATGCCTGTGGCTCGGTGTAATCAGACAGAATGCAGGCCAGAGAAGGGATATGAAATGTCTCATGAGCAGTACCTGAAGGGGAATCTGTCTCTCACCATCACTGCAGTAGATTACAGTAAGAGAACCTGGTACAAGTGTCGCTGTGATGGCCGAGACGTCTGTGACGTGAACCTTCGGATTGAGCCTCTTGAGCTTACCAGAAAGATGAAGCCTGGAGAACCCCTCTTCCTGGAACTGCCCATCACAGAGAACGTTAAGGTCACCTTTAACCAGAGCGGTGATGATGGCAGTCAGAGGTCTGTCCTAGTGTGTACAGCCGATGGTCGTAAACTTCAGTGTGACTCAGAGTATAAGAATAGAGCGTCGCTGAAGTCGTCTCTGACCCTGACTGAAGTGAAGGAGTCTGACAGAGGAGTGTACACTGTGCAGGACACTGAAAATGAAGAGGTCATAGCTACATACACTGTCACAGaggaGAAGCCATGTCCAGACTGTAAGCAGGACAGAGCCATGCCAGCGTGGGGGATTAcactgatagtggtgca
>XM_026916719.2
TTTCCGGAAAGGTAACCTGGCAACCTGATAACCCCGCCTCTTTCGGTGACCAGTTCCGGGTTATAGCGGATCCAGTGATCCAGCTGTGAGTAGCTCTCTCCCGCTGGATGCTGGTGTgtggacagttaatgacagctCTTACAGTTTTTTAAACTCCGTGATTAAAACTCTCACTGTTCTCTGCTCGTCTCATTGAGCAGGTTTATTAGCGACTCCGCTCGTTAGCCAGTTAGCTTAGCTCTGAGCTAGCCTCGCCTGCTTCGGAGATGTTTTGGAGCAGTTGTGTGTCTAATAAAGAAATGAAGAGCTTTAACATCCTTGTGATCCTGGTGCTGGTTTTGACAGtattGGTTTGTGCATCAGGTGATTATACGATGGCCAAACTGAACCAGACCGCTACGCTCCTCTGTACTGGTTCATGTCCTGGCTTAATGGAATGGACCCAGCCCCGTAACAAAGACATGCCTGTGGCTCGGTGTAATCAGACAGAATGCAGGCCAGAGAAGGGATATGAAATGTCTCATGAGCAGTACCTGAAGGGGAATCTGTCTCTCACCATCACTGCAGTAGATTACAGTAAGAGAACCTGGTACAAGTGTCGCTGTGATGGCCGAGACGTCTGTGACGTGAACCTTCGGATTGAGCCTCTTGAGCTTACCAGAAAGATGAAGCCTGGAGAACCCCTCTTCCTGGAACTGCCCATCACAGAGAACGTTAAGGTCACCTTTAACCAGAGCGGTGATGATGGCAGTCAGAGGTCTGTCCTAGTGTGTACAGCCGATGGTCGTAAACTTCAGTGTGACTCAGAGTATAAGAATAGAGCGTCGCTGAAGTCGTCTCTGACCCTGACTGAAGTGAAGGAGTCTGACAGAGGAGTGTACACTGTGCAGGACACTGAAAATGAAGAGGTCATAGCTACATACACTGTCACAGGGTCTAAACCAGAGCAGCCGGGTTCTGGAGCTGCGCTCGTGTCCCAGCCTCAATCTCGAGGACGCCGCAGTGTCTCTGaggaGAAGCCATGTCCAGACTGTAAGCAGGACAGAGCCATGCCAGCGTGGGGGATTAcactgatagtggtgcagttcTTGGTCATAGCTGTGCTGATAGTTTATCTGGTGAAAAGAAAACCTCCACTCCAGAGAGAACCTGCAGTCAACAGACACACAGTGCCTCAAACGAACGGAAACACCACATACAATACACGAGAACAGAAAGTACAAATACTCAATGACTCCACAAACACTGGAACTTAGAGGCTGTAGTTTATTTTGCTAGGTGATGAAAAGAATAACCAGctgtgagtgacagagagatgaaaacaGCCCTGAGATTGCAATAAATATCCAGCTACTAGTGACTATAAACAGTAGAAATATTTTAGTAACTGTGTGACAGAACGCCCCCTAACACACTCCTCcaccttctcttcttctctttcagcTCAGTAGAGTATAAAAGCTGAATCTCAGAGCTGTTTAGAGATGTTTAGTGATGAACTGCAGACTCCTGAAACTCTGAAACTCCTTTCACTGACTGAATGAGGATCAGATTATTCCTGTTACAGTCCAGCTACTGGCTCCAAGCTGAATATAGAAttcactttattcatttattagtgATTTTAAATCTCCTGATAAGTAAAAGCTAAACGTTCCCCTACACTATAAGCTAAACCTTCCCTTAAACTAACTCAGTTCACATTTAAATCTTAACCTAAACCCTTCCTCTctcccttcttctctctctctctctctctctctctcattttcatttattatattagccttttcttctcttccattTACTACTAAAGTCTCCTCTTCACACTCATCTAATGTCGTTTATCTTTCACTTTTATCCCTTACTGCCTACCTCACTTTCGTCACTTTTTTCTGCCActtgtgacgtgtgtgtgtgacgtgtgtgtgacgtgtgcgtgtgtgtgttatttctccCTGATCCATCATGCATTACTCTTAATCACATGACTTCATCATGTCCGTGTTAGCATTCTGCACTTTTCCTCTTACTGCCTTCATGACTTGGCTCattactgacacacacctcTAACTCAGCTTTACTAACATGGCATTT
>XM_026916720.2
TTTCCGGAAAGGTAACCTGGCAACCTGATAACCCCGCCTCTTTCGGTGACCAGTTCCGGGTTATAGCGGATCCAGTGATCCAGCTGTGAGTAGCTCTCTCCCGCTGGATGCTGGTGTgtggacagttaatgacagctCTTACAGTTTTTTAAACTCCGTGATTAAAACTCTCACTGTTCTCTGCTCGTCTCATTGAGCAGGTTTATTAGCGACTCCGCTCGTTAGCCAGTTAGCTTAGCTCTGAGCTAGCCTCGCCTGCTTCGGAGATGTTTTGGAGCAGTTGTGTGTCTAATAAAGAAATGAAGAGCTTTAACATCCTTGTGATCCTGGTGCTGGTTTTGACAGtattGGTTTGTGCATCAGGTGATTATACGATGGCCAAACTGAACCAGACCGCTACGCTCCTCTGTACTGGTTCATGTCCTGGCTTAATGGAATGGACCCAGCCCCGTAACAAAGACATGCCTGTGGCTCGGTGTAATCAGACAGAATGCAGGCCAGAGAAGGGATATGAAATGTCTCATGAGCAGTACCTGAAGGGGAATCTGTCTCTCACCATCACTGCAGTAGATTACAGTAAGAGAACCTGGTACAAGTGTCGCTGTGATGGCCGAGACGTCTGTGACGTGAACCTTCGGATTGAGCCTCTTGAGCTTACCAGAAAGATGAAGCCTGGAGAACCCCTCTTCCTGGAACTGCCCATCACAGAGAACGTTAAGGTCACCTTTAACCAGAGCGGTGATGATGGCAGTCAGAGGTCTGTCCTAGTGTGTACAGCCGATGGTCGTAAACTTCAGTGTGACTCAGAGTATAAGAATAGAGCGTCGCTGAAGTCGTCTCTGACCCTGACTGAAGTGAAGGAGTCTGACAGAGGAGTGTACACTGTGCAGGACACTGAAAATGAAGAGGTCATAGCTACATACACTGTCACAGaggaGAAGCCATGTCCAGACTGTAAGCAGGACAGAGCCATGCCAGCGTGGGGGATTAcactgatagtggtgcagttcTTGGTCATAGCTGTGCTGATAGTTTATCTGGTGAAAAGAAAACCTCCACTCCAGAGAGAACCTGCAGTCAACAGACACACAGTGCCTCAAACGAACGGAAACACCACATACAATACACGAGAACAGAAAGTACAAATACTCAATGACTCCACAAACACTGGAACTTAGAGGCTGTAGTTTATTTTGCTAGGTGATGAAAAGAATAACCAGctgtgagtgacagagagatgaaaacaGCCCTGAGATTGCAATAAATATCCAGCTACTAGTGACTATAAACAGTAGAAATATTTTAGTAACTGTGTGACAGAACGCCCCCTAACACACTCCTCcaccttctcttcttctctttcagcTCAGTAGAGTATAAAAGCTGAATCTCAGAGCTGTTTAGAGATGTTTAGTGATGAACTGCAGACTCCTGAAACTCTGAAACTCCTTTCACTGACTGAATGAGGATCAGATTATTCCTGTTACAGTCCAGCTACTGGCTCCAAGCTGAATATAGAAttcactttattcatttattagtgATTTTAAATCTCCTGATAAGTAAAAGCTAAACGTTCCCCTACACTATAAGCTAAACCTTCCCTTAAACTAACTCAGTTCACATTTAAATCTTAACCTAAACCCTTCCTCTctcccttcttctctctctctctctctctctctctcattttcatttattatattagccttttcttctcttccattTACTACTAAAGTCTCCTCTTCACACTCATCTAATGTCGTTTATCTTTCACTTTTATCCCTTACTGCCTACCTCACTTTCGTCACTTTTTTCTGCCActtgtgacgtgtgtgtgtgacgtgtgtgtgacgtgtgcgtgtgtgtgttatttctccCTGATCCATCATGCATTACTCTTAATCACATGACTTCATCATGTCCGTGTTAGCATTCTGCACTTTTCCTCTTACTGCCTTCATGACTTGGCTCattactgacacacacctcTAACTCAGCTTTACTAACATGGCATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU411849 False 1021 TUCP 0.50 6 206493 210642
TU411850 False 943 TUCP 0.49 5 206493 210642
XM_026916719.2 True 2097 mRNA 0.45 6 205480 210705
XM_026916720.2 False 2019 mRNA 0.45 5 205480 210705

Neighbor

gene id symbol gene type direction distance location
LOC113528268 NA coding downstream 20929 161020 ~ 184551 (-)
LOC117595912 NA coding downstream 70941 126990 ~ 134539 (-)
LOC117595913 NA coding downstream 82819 119182 ~ 122661 (-)
LOC117595914 NA coding downstream 88975 95456 ~ 116505 (-)
LOC113525747 NA coding downstream 113611 86459 ~ 91869 (-)
LOC113528265 NA coding upstream 10724 221429 ~ 226704 (-)
mybbp1a mybbp1a coding upstream 28112 238817 ~ 254544 (-)
fgf10b NA coding upstream 46822 257527 ~ 260223 (-)
adamts12 adamts12 coding upstream 50934 261639 ~ 282406 (-)
lrp13 LOC108255551 coding upstream 162745 373450 ~ 385400 (-)
G347652 NA non-coding downstream 66667 120309 ~ 138813 (-)
G347634 NA non-coding downstream 170702 17440 ~ 34778 (-)
G347703 NA non-coding upstream 118209 328914 ~ 329608 (-)
G347704 NA non-coding upstream 122537 333242 ~ 333755 (-)
G347672 NA non-coding upstream 143622 354327 ~ 355340 (-)
G347723 NA non-coding upstream 184662 395367 ~ 397450 (-)
G347753 NA non-coding upstream 317243 527948 ~ 619562 (-)
LOC117595911 LOC108255570 other downstream 3490 192549 ~ 201990 (-)
LOC117595978 NA other downstream 55674 118198 ~ 149806 (-)
G347628 NA other downstream 80274 87567 ~ 125206 (-)
G347622 NA other downstream 84369 95363 ~ 121111 (-)
G347621 NA other downstream 105818 86663 ~ 99662 (-)
LOC117595925 NA other upstream 19820 230525 ~ 237272 (-)
LOC113528009 atp5i,atp5ib,atp5ia,LOC107703581 other upstream 153301 364006 ~ 367739 (-)
rusc2 rusc2,LOC108255549 other upstream 207602 418307 ~ 466255 (-)
LOC113527995 LOC108255428 other upstream 646075 856780 ~ 924667 (-)
G347896 LOC108255572,LOC108255614,LOC108255576,LOC108255575,LOC108255573 other upstream 708679 919384 ~ 1701550 (-)

Expression


Co-expression Network