LOC117595978


Basic Information

Item Value
gene id LOC117595978
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 118198 ~ 149806 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU411860
TGGCTCAGTGTGATCAGACATCATGCAGGTCAGAGGAGAGATTTAACGTCTCTCATGATCAGTACCTGAAGGGGAATCCACATCTCACCATCACTGCAGCTGATTACAGTACGAGAGGTTTATACACGTGTCAGTGTGATGGCAAAGACGTCTGTGACGTGCGGCTCGTCATTGAGaCTCAAGTGATGAGCCGTGAGATTACCCCAGGCGAGCCCATAGACGTGTACTTACCCCTCACTGACCGGGTGGAGGTGAGTTTTACTGCGAGTGATGCTGCACAACCATCAGACCTGCAGATCTGCACCGTGGACAACGAGAA
>XM_034299335.1
ATGCTACAGAGCACTGAGCACCAGAACGGCCAGGCACAGGAACAGTTTCTTTCCTCAGGCATGTGGAGCTACACACTTCTGTTTGGGCTGCAGATTTTCACCATTGCTGCCACTGTGTCTGGTGAACGTTCAGTAACAGCCAAACTTCATCACCCTGCTACTCTCACCTGTGACTGGAAATGTTCTGGTTCACTCAAATGGACCCTGTTTGATAAACCAGGTAGTGTTCTGGCTCAGTGTGATCAGACATCATGCAGGTCAGAGGAGAGATTTAACGTCTCTCATGATCAGTACCTGAAGGGGAATCCACATCTCACCATCACTGCAGCTGATTACAGTACGAGAGGTTTATACACGTGTCAGTGTGATGGCAAAGACGTCTGTGACGTGCGGCTCGTCATTGAGaCTCAAGTGATGAGCCGTGAGATTACCCCAGGCGAGCCCATAGACGTGTACTTACCCCTCACTGACCGGGTGGAGGTGAGTTTTACTGCGAGTGATGCTGCACAACCATCAGACCTGCAGATCTGCACCGTGGACAACGAGAAGATACAGTGCAGTCCAGATTATAAAGAGAGAGCGTCTCGCTTCAACACTCTTCAGATTAAAGATGGAAATGTCTCTGACAGTGGCAGCTACACAGTACGGGATGTCACGAACGATGAGATTATAGCCATCGTAACAGTCCATGTGAGAGATGTGTCTGAGTCCCAGACTGACTCTGGAGGACGCTGCAGTGTCTCCTCTGaagACCAGCCAGGTTCGGACATCAGGCAGGAGGGAGGTGTACCAGCGTGTGGGATTGtactgatgctgctgctgctggttgTAGCTGCGTTTGTGTTCCTGATGGTGATGTATGTGCGTCTGAGGAGAGAGAATCAGCAGCTCCGTGAGAAAGATGAAAACAACAGACACGAGCTGCCCCTAATGAATGTAAATGCTAACCATGATCCAGGAGAAGAGCAGGACTTAGTACACACTGAGCTTACTGAACccacaaacactgaacactattctattataataaaatctttagaatagaatagaagagCTTTATTGTGCTGCATGATCACAGTGAAAGTAAGTTTGAATTTCCTGCTGTTACATGATGGAGAATATGTCAGTAATGTAAATATAGAGTAACGTCCTTTACAGGAAGAAGTGTGCAGTATGAGAGTGAGTGCAAGTGCTGAAACAGCAGGGTGGTGGAGCTGTAGGTCACATACACAAGTGACGGATGTTGTACAATCACAGTGAGGTAACAGTGTcggggtcagggttagggtgttAATGGTTCTCAAATCACGCTGAGCAAATTGACTTCAGACGTGTTcagtggtgtttaatgatgCGTTTCAGTCACGTCTAATTCAGCACACGCAGGGAAACGTGGTGCTTTTCTTCATAATTCAGTATTATCCGTAAGAAAGGACCAGAATAAATAACTACTGATGTGATAATCAGAGTGTAGACGAGCCACAGTGTGTAAAACTACTGATCAGGAACTACTGAAACTTCTTGTACTGACTGATGCTAAGTGAGGACGTGAGTTTACTCCTGTTACATTCCATCCACTGACACCCCGTGCCTTATAGACTTCCCTTTAACCTTTAGTACAGGTATTAAACACCTCAGTAAGACCTTTTATAACGCATAATAACTGATGCACTATATCACGCCGTGCCTTATAGACTTCCCTTTAACCTTTATTACAGGTATTAAAGACCTCAGTAAGACCTTTTATAACGCATAATAACTGATGCACTATATCACCCGTGCCTTATAGACTTCCCTTTAACCTTTAGTACAGGTATTAAAGACCTCAGTAAGACCTTTTATAACGCATAATAACTGATGCACTATATCACCCCGTGCCTTATAGACTTCCCTTTAACCTTTATTACAGGTATTAAACACCTCAGTAAGACCTtttataacacataataacTGATGCACTATATCACCCCGTGCCTTATAGACTTCCCTTTAACCTTTATTACAGGTATTAAACACCTCAGTAAGACCTtttataacacataataacTGATGCACTATATCACCCCGTGCCTTATAGACTTCCCTTTAACCTTTATTACAGGTATTAAACACCTCAGTAAGACCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU411860 False 319 lncRNA 0.51 2 139214 141057
XM_034299335.1 True 2126 mRNA 0.44 7 118198 149806

Neighbor

gene id symbol gene type direction distance location
LOC117595914 NA coding downstream 1693 95456 ~ 116505 (-)
LOC113525747 NA coding downstream 26329 86459 ~ 91869 (-)
LOC113524950 NA coding downstream 37848 73680 ~ 80350 (-)
paip1 paip1 coding downstream 46714 61601 ~ 71484 (-)
LOC113528268 NA coding upstream 11214 161020 ~ 184551 (-)
LOC113528265 NA coding upstream 71623 221429 ~ 226704 (-)
mybbp1a mybbp1a coding upstream 89011 238817 ~ 254544 (-)
fgf10b NA coding upstream 107721 257527 ~ 260223 (-)
adamts12 adamts12 coding upstream 111833 261639 ~ 282406 (-)
G347634 NA non-coding downstream 83420 17440 ~ 34778 (-)
G347623 NA non-coding upstream 25217 175023 ~ 206293 (-)
G347703 NA non-coding upstream 179108 328914 ~ 329608 (-)
G347704 NA non-coding upstream 183436 333242 ~ 333755 (-)
G347672 NA non-coding upstream 204521 354327 ~ 355340 (-)
G347723 NA non-coding upstream 245561 395367 ~ 397450 (-)
G347621 NA other downstream 18536 86663 ~ 99662 (-)
LOC117595911 LOC108255570 other upstream 42743 192549 ~ 201990 (-)
LOC113528266 NA other upstream 55674 205480 ~ 210705 (-)
LOC117595925 NA other upstream 80719 230525 ~ 237272 (-)
LOC113528009 atp5i,atp5ib,atp5ia,LOC107703581 other upstream 214200 364006 ~ 367739 (-)
rusc2 rusc2,LOC108255549 other upstream 268501 418307 ~ 466255 (-)

Expression


Co-expression Network