LOC117595911 (LOC108255570)


Basic Information

Item Value
gene id LOC117595911
gene name LOC108255570
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 192549 ~ 201990 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU411899
ctttgtttctgtttgttggAGCAAAGTGGGTCTTGTTCCTCATCCTGGTGAGTGCTGGATAGAAGTGTTTGTTTTACAGGAAGAACTTGTTTGACTCACCGACACTGAATATTGTAATGGATTTTAAAAGGCTGGATTGAGAAGAGCTGACAAATCAGCCATGCAGTCCTGCAGCATTCATCACTGTGTCCTGTTCTTCCTCACCCTCACATTCACCACTGCTCCTGTATCAGCTGCTGTCTGTTCTACAACAGTGAAGCTTCATCAGTCTGTGACTCTCTcatgtgaatataaatgttCTGGTTCAGTCAAATGGGCCTTATTTAATAATCGAGATGTTGTCCTGGCTCGGTGTAATAAGACATCATGCAGCTCACTGAAGAAGGGATATGAAATGTCTCATGATCAGTACCTGAAGGgagatctctctctcaccatcacTGCAGCTGATTACAGTAAGAGGAACACATACGCGTGTGAGTGTGGAATCTCGGAAATCTCtactgtgcgcctcagcattGAGACTGTGTTCTCAGCAGTTCAGATGAATCCTGGTGAAGATCTGATCCTGGATTTGAGCGTACCAGAGCCAGTGGAGGTGATTTATAAAAGCAGAGATTCAGCTGATGGTGAACAGATCTGCACTGTGACTCAACGCTCACTACAGTGTAAagctgaatacacacacagaacatcacTCAGTCACCCAGAGCTCACACTGAGAGACGTGCAGCCGAGTGATAGTGGAAGTTACACCATCCGGGACCTGAAGAATAACGAAGACCTTCGTGTGTACACCGTCTCTTTGGCAGGT
>XM_034298963.1
GTCCTTGTGGATTTATTCTGCACTTCctgctttgtttctgtttgttggAGCAAAGTGGGTCTTGTTCCTCATCCTGCCATGCAGTCCTGCAGCATTCATCACTGTGTCCTGTTCTTCCTCACCCTCACATTCACCACTGCTCCTGTATCAGCTGCTGTCTGTTCTACAACAGTGAAGCTTCATCAGTCTGTGACTCTCTcatgtgaatataaatgttCTGGTTCAGTCAAATGGGCCTTATTTAATAATCGAGATGTTGTCCTGGCTCGGTGTAATAAGACATCATGCAGCTCACTGAAGAAGGGATATGAAATGTCTCATGATCAGTACCTGAAGGgagatctctctctcaccatcacTGCAGCTGATTACAGTAAGAGGAACACATACGCGTGTGAGTGTGGAATCTCGGAAATCTCtactgtgcgcctcagcattGAGACTGTGTTCTCAGCAGTTCAGATGAATCCTGGTGAAGATCTGATCCTGGATTTGAGCGTACCAGAGCCAGTGGAGGTGATTTATAAAAGCAGAGATTCAGCTGATGGTGAACAGATCTGCACTGTGACTCAACGCTCACTACAGTGTAAagctgaatacacacacagaacatcacTCAGTCACCCAGAGCTCACACTGAGAGACGTGCAGCCGAGTGATAGTGGAAGTTACACCATCCGGGACCTGAAGAATAACGAAGACCTTCGTGTGTACACCGTCTCTTTGGCAGgtgagagGATTCCTTGGTGGATAACTGTTCTATTGATAGTGCTGCTGGTGGTGATTCTGCTGCTGGCTCTCACTGGATTTATAAAATACCAAAAGAATGCAGTCCATCGGGAATTCCTAAAGgTGAGCAAACAGCTGGAACATGTGAACAAGCTTATACAGCAGGCTGAACGTGGGAACGAACAGGTCAGTGAGGCAGAGGAGGCAATGAAGGAGCTGGAACAGCAGTACAGAGAGAACCCTAAATATTCAGAACAGATCAAATTGTTCTGCAAGGCGAAGAGAGCAGAGCTGAAACAGCGCAGTggtgaagaaggagaaggactTCTGCTGACTGAGAGAGGAGGGATGTTGAGGAAGATGGAGGAGGTGATAAACAGTTTACAGCGACTCAGTGGTGATGGAGCAGGACACCTGCAGGATACGAGCTCTGGCAACATTGCAGAGACGGAGAACGATCTGGCTGAGATCGAACAGTGGTGTAGAGAGAAGAGGGCGGAGTTAAACAACCTCGTACAGCAGCGCAGAGGTGGAGAGCCTGAAGGAACATCTGGAGGAAATCAGACAGTGGtgcagagagaagagagtgaaGCTCCATGATCTCGTACAGCAGTGCAGAGGTGGAGCAGTGTGagagtttacatttacatagtTAGAGTTTTaatcttttggaaaaattttAGTTTTCATTCACTCAAAAGGCTTATTGTTAATTTTACTTCAGAATTAAAACATAtttcgggaaaaaaaaaaaaaaaaactaaaggaaTTTTAGCCAACTATTTCTCCTTTTATAAGGAAGTGTGTGCATTTACTAGCGTTATTGTAATAAGAAGTTTTATTACGCTGAATGCACTTACTAATTTCAGTAATTTTGTTCAGGAGTTATCAGGTAAGCTCATTGCAGCTAGCTAGGATTATAATAGCCTAACAAGACAGTTTGTGTAGCAGAGCataaaacagtttattataAAAGAACATCACTGTGAGCCAAAAGGATGCTTATGAGGCATGTAAGGAGTGTTCCAGCATCTTTCTCTAGTCGGTTAAACTCCTGGATAAACACCTCGATGCTGCATTCCCTGTTTATCCCTGTTTTACAAACAACAGATGGCTGAACGAGATCCAGCTTGTGGCAATTTTCGGTGCTGAAAACACAAGACTTTACAGTGTTAACACACGGTTATTACTGCACTGTGAATGaataacagaaaaatgaatatttctttTGGACTTGCTCTGCAGGGCAGTTTATTGCACATGTACAGCGTCCTCCATAATGCTTGGGAGAAAGGCTTATTTAtttgcctctgtactccacAGTTTTCAATTTGTCCTCAAACAATTCACATGTGGTTAAAGTGCACATTCTCAGGTTTTAATGAAggataattttatacattttagtgTAACCATGTAGAAATTACAGTACAGAACTCGGCTTCAGATGGCTGAGTTTGGAGAACGCTCTAATGTGGGAAGTAGGAGGTTCTGTGCTGGGAGGTTACGAGTTCCCACTTGTCACGAACGCAGCACAGGAAACTCAGGATGGTGTCTCCTCCACccgtgacgtcaaatcaacatggctgctcacagcatcaacagcaTTCCTTACATGAGTTATACAAGTATATTAAATTAGGTGAGTTATACTATACACAGTTACGTGCTCAGGATCAATTAACATGCAGACATATGCGCTTGTTCCTGTACATCtttaacactgactgtacaCATCACTACTTTAAGGAGATGCAGTAAATAATCACTCATAACTACCTGGCTAGCTTGCTGCTAACAAAACATTAAcctggaggcgtccatgttttttcccccttttgaAAGCACTGAGGTTGAAAACGACGTCATTCCGAGCTTGGACTTCTCACCTCTGAGTTACAGAATACAGCATTATCACTCAGAAATCTGCCAAAAGAGCAGTTTTATTCAACAATTTCTGTACAAATACACGCAGCTCTGTTCAGGATTAGCTAACTAACAACAAccactgtagtgtgtagtgtaggttTTAGTGCAGTGTGTTGTTACTAACTCTGTGTGACCTGATCACCATGATGTATGAAATGAAGCGTATTACCAGGAGGTGGAGGAACACCAACAGTCATCATCCACAGCCTCTGCTACACTGCCTGTCACGTGTTCATATTCTATACAGCACATatcattatacatatttattcatcatattgtacataaagtacatttttctattttttctcatATGCTGTTTCGTTCATTTCACTTGCAGTGCacattgcacatgtttatgaagCACAAAATCCTTTTGCACATTCTGCTGCAGATATTCCTTggtatattttttcatattcttttaattttgttcatatttatattaaacagtCGATCTGTATGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU411899 False 814 TUCP 0.46 4 197392 201961
XM_034298963.1 True 3125 mRNA 0.42 7 192549 201990

Neighbor

gene id symbol gene type direction distance location
LOC113528268 NA coding downstream 7998 161020 ~ 184551 (-)
LOC117595912 NA coding downstream 58010 126990 ~ 134539 (-)
LOC117595913 NA coding downstream 69888 119182 ~ 122661 (-)
LOC117595914 NA coding downstream 76044 95456 ~ 116505 (-)
LOC113525747 NA coding downstream 100680 86459 ~ 91869 (-)
LOC113528265 NA coding upstream 19439 221429 ~ 226704 (-)
mybbp1a mybbp1a coding upstream 36827 238817 ~ 254544 (-)
fgf10b NA coding upstream 55537 257527 ~ 260223 (-)
adamts12 adamts12 coding upstream 59649 261639 ~ 282406 (-)
lrp13 LOC108255551 coding upstream 171460 373450 ~ 385400 (-)
G347652 NA non-coding downstream 53736 120309 ~ 138813 (-)
G347634 NA non-coding downstream 157771 17440 ~ 34778 (-)
G347703 NA non-coding upstream 126924 328914 ~ 329608 (-)
G347704 NA non-coding upstream 131252 333242 ~ 333755 (-)
G347672 NA non-coding upstream 152337 354327 ~ 355340 (-)
G347723 NA non-coding upstream 193377 395367 ~ 397450 (-)
G347753 NA non-coding upstream 325958 527948 ~ 619562 (-)
LOC117595978 NA other downstream 42743 118198 ~ 149806 (-)
G347628 NA other downstream 67343 87567 ~ 125206 (-)
G347622 NA other downstream 71438 95363 ~ 121111 (-)
G347621 NA other downstream 92887 86663 ~ 99662 (-)
LOC113528266 NA other upstream 3490 205480 ~ 210705 (-)
LOC117595925 NA other upstream 28535 230525 ~ 237272 (-)
LOC113528009 atp5i,atp5ib,atp5ia,LOC107703581 other upstream 162016 364006 ~ 367739 (-)
rusc2 rusc2,LOC108255549 other upstream 216317 418307 ~ 466255 (-)
LOC113527995 LOC108255428 other upstream 654790 856780 ~ 924667 (-)

Expression


Co-expression Network