G347672


Basic Information

Item Value
gene id G347672
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 354327 ~ 355340 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU411911
TTTAAAATACAACTCAAATACAACAGCTCAGTTCATTACAATGTCTTTTACATGGTTCTATTTCTGCCTGTACAGAGAGTTCACTTCACAATCCTGATTCTCTCAATAACTTAAATAACTCCGTCTCTACAAAGTGCAAATTCACAATTCATACATGGCAACGGCACGAAAACGACATCCGCCGAGGGAACGGTTCACATTTCACCTGTGCAATAATCACACCAATGtcttactgagagagagagagagagagagagagagagaaacagtgtgtgtgagagagagagagagagagagtcagagagactATGATTTCTGTTGTGCTCCCGTGCTGCTCTGCGTGTTGCTCTCTGGTTTTGCAATCTGGTAGGTGATGAGATACTCTGGATacgcctgaaacacacacacacacacacacacacacacacattgtatacCACACAAACATCAGTGTGTCTGTAGTAAGCCACAAGCTCTACTCAGAGGAGAAAACTGCAGTACATAAGAACACCAAAAATGAGAagtatatacatgcatatactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacacctgcTCTCCCCTGTAGATGACGTACTCGGCGTAGGCCAGGCCGTTCACACTGGGCCTCCCGATCACTGAGTGATGAGCAGGAGGAGCGTGAGCCATCTTCATCGCACTGAACTGCAGGAACGACTTCCCCAGAGTCACCCTGCAGAACAGCATctgcctgtaacacacacacgcacacacacacacacacacacacacacgcacagtcaGTAAGAGTAACTACTATCCACAGTAAAGTAAAAACCCGTCTCTCTGTGGGGGCGTGGCCTTGCTCACCTGtggcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU411911 True 863 lncRNA 0.47 2 354327 355340

Neighbor

gene id symbol gene type direction distance location
adamts12 adamts12 coding downstream 71921 261639 ~ 282406 (-)
fgf10b NA coding downstream 94104 257527 ~ 260223 (-)
mybbp1a mybbp1a coding downstream 99783 238817 ~ 254544 (-)
LOC113528265 NA coding downstream 127623 221429 ~ 226704 (-)
LOC113528268 NA coding downstream 169776 161020 ~ 184551 (-)
lrp13 LOC108255551 coding upstream 18110 373450 ~ 385400 (-)
atp8b5a LOC108255417 coding upstream 84996 440336 ~ 469953 (-)
LOC113528156 LOC108255548 coding upstream 120154 475494 ~ 516272 (-)
LOC113528517 LOC108255548 coding upstream 168467 523807 ~ 577436 (-)
pgam5 pgam5 coding upstream 297649 652989 ~ 658898 (-)
G347704 NA non-coding downstream 20572 333242 ~ 333755 (-)
G347703 NA non-coding downstream 24719 328914 ~ 329608 (-)
G347623 NA non-coding downstream 148034 175023 ~ 206293 (-)
G347652 NA non-coding downstream 215514 120309 ~ 138813 (-)
G347634 NA non-coding downstream 319549 17440 ~ 34778 (-)
G347723 NA non-coding upstream 40027 395367 ~ 397450 (-)
G347753 NA non-coding upstream 172608 527948 ~ 619562 (-)
G347759 NA non-coding upstream 279419 634759 ~ 638280 (-)
G347821 NA non-coding upstream 287646 642986 ~ 643487 (-)
G347833 NA non-coding upstream 317737 673077 ~ 676630 (-)
LOC117595925 NA other downstream 117055 230525 ~ 237272 (-)
LOC113528266 NA other downstream 143622 205480 ~ 210705 (-)
LOC117595911 LOC108255570 other downstream 152337 192549 ~ 201990 (-)
LOC117595978 NA other downstream 204521 118198 ~ 149806 (-)
G347622 NA other downstream 233216 95363 ~ 121111 (-)
LOC113528009 atp5i,atp5ib,atp5ia,LOC107703581 other upstream 8666 364006 ~ 367739 (-)
rusc2 rusc2,LOC108255549 other upstream 62967 418307 ~ 466255 (-)
LOC113527995 LOC108255428 other upstream 501440 856780 ~ 924667 (-)
G347896 LOC108255572,LOC108255614,LOC108255576,LOC108255575,LOC108255573 other upstream 564044 919384 ~ 1701550 (-)
G347960 NA other upstream 721393 1076733 ~ 1079139 (-)

Expression


Co-expression Network