Gene
RNA
| Item | Value |
|---|---|
| gene id | G347704 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047618.1 |
| NCBI id | CM018564.1 |
| chromosome length | 20251756 |
| location | 333242 ~ 333755 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU411952 | True | 222 | lncRNA | 0.41 | 2 | 333242 | 333755 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| adamts12 | adamts12 | coding | downstream | 50836 | 261639 ~ 282406 (-) |
| fgf10b | NA | coding | downstream | 73019 | 257527 ~ 260223 (-) |
| mybbp1a | mybbp1a | coding | downstream | 78698 | 238817 ~ 254544 (-) |
| LOC113528265 | NA | coding | downstream | 106538 | 221429 ~ 226704 (-) |
| LOC113528268 | NA | coding | downstream | 148691 | 161020 ~ 184551 (-) |
| lrp13 | LOC108255551 | coding | upstream | 39695 | 373450 ~ 385400 (-) |
| atp8b5a | LOC108255417 | coding | upstream | 106581 | 440336 ~ 469953 (-) |
| LOC113528156 | LOC108255548 | coding | upstream | 141739 | 475494 ~ 516272 (-) |
| LOC113528517 | LOC108255548 | coding | upstream | 190052 | 523807 ~ 577436 (-) |
| pgam5 | pgam5 | coding | upstream | 319234 | 652989 ~ 658898 (-) |
| G347703 | NA | non-coding | downstream | 3634 | 328914 ~ 329608 (-) |
| G347623 | NA | non-coding | downstream | 126949 | 175023 ~ 206293 (-) |
| G347652 | NA | non-coding | downstream | 194429 | 120309 ~ 138813 (-) |
| G347634 | NA | non-coding | downstream | 298464 | 17440 ~ 34778 (-) |
| G347672 | NA | non-coding | upstream | 20572 | 354327 ~ 355340 (-) |
| G347723 | NA | non-coding | upstream | 61612 | 395367 ~ 397450 (-) |
| G347753 | NA | non-coding | upstream | 194193 | 527948 ~ 619562 (-) |
| G347759 | NA | non-coding | upstream | 301004 | 634759 ~ 638280 (-) |
| G347821 | NA | non-coding | upstream | 309231 | 642986 ~ 643487 (-) |
| LOC117595925 | NA | other | downstream | 95970 | 230525 ~ 237272 (-) |
| LOC113528266 | NA | other | downstream | 122537 | 205480 ~ 210705 (-) |
| LOC117595911 | LOC108255570 | other | downstream | 131252 | 192549 ~ 201990 (-) |
| LOC117595978 | NA | other | downstream | 183436 | 118198 ~ 149806 (-) |
| G347622 | NA | other | downstream | 212131 | 95363 ~ 121111 (-) |
| LOC113528009 | atp5i,atp5ib,atp5ia,LOC107703581 | other | upstream | 30251 | 364006 ~ 367739 (-) |
| rusc2 | rusc2,LOC108255549 | other | upstream | 84552 | 418307 ~ 466255 (-) |
| LOC113527995 | LOC108255428 | other | upstream | 523025 | 856780 ~ 924667 (-) |
| G347896 | LOC108255572,LOC108255614,LOC108255576,LOC108255575,LOC108255573 | other | upstream | 585629 | 919384 ~ 1701550 (-) |
| G347960 | NA | other | upstream | 742978 | 1076733 ~ 1079139 (-) |
