G347753


Basic Information

Item Value
gene id G347753
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 527948 ~ 619562 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU412023
acacaatacacacacaatacacacacaatacacacacagtagagtgaatttttctttatttcctccattttttatAATCAGACAGAGCAGCGCCAGGCCTCGGGGTACTTCACTGATCTCTCCAGATCCTCCACTCAGGCAGGAACCCTCGCCTCCCGGGTTCTCCCTCGGAACCCCAGCATTCTGTCGAACGAACTCACTTCCTGCTCGCTCTGCATCCagtacaggaaaaaaacaaacacacacgagCTGACGCGGGACAGAGCCGAGCCCCGCCCCCTGTCAGGGCGATCAGGTGATCCGTACACAAGCAGACGAGTGCAAGAGAGAGTGTGTaggtgtctgagtgtgtgtaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtctgagtgtgtgagtgtgtgtgtgagagagaggaatggaTTAAGAATGACGCCGAGGTCTCTGatggacaaattaaaaaaaaataaacaaaaacaaagagctTTGAACCCAAAATAAAGAGACTAAAGTGTCCGAATGTCGTGTTCAGAGTCTGTTGTAGAAAAGAGAAGAAGTGCTGCGAGGGAGGGGGgcggagaagaagaaaaacgaCACTCATTTCTCCTcgtcctccttcttcttctcctcctccgttttctccttcacttcctctttcttctcctccttcgtCTTCTTGTCCTTGATTGACAGCTCCTCCAGTTTCTCCGCCACGTTGTTGGCTTTGTTTCCAccttctgacacacacacacacacacacacacacacacacacacacgttaaatTAATTAGTGGccaaaagtaactataaacggataaaaagtttGACGTTCGTTACTAAATGAAAACGTGTTGCtgaggtgtaagaggaataaaacactcagggacatgctgttaaaggaatataatcaacttcagcttcatcacatcacctcgtcactgattattttcctataagcaGCACCACCCACGTGATGACACGCGTTCCTCAGTGCTAACAGGTGTAGCAGAGCGCTCTGTAGCTCCTCCCAGAGGGGGCGGAGTCAGTGTGGAGCGGTTCTGTAACCTTGCTGTAGCAGACTGAAAAAGTTCCGAGCCGGAGGAGGCGACCCCAAACAGAGTGAGTCTGCAgagtgcgcgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagaTGTATTATGT
>TU412026
acacaatacacacacaatacacacacaatacacacacagtagagtgaatttttctttatttcctccattttttatAATCAGACAGAGCAGCGCCAGGCCTCGGGGTACTTCACTGATCTCTCCAGATCCTCCACTCAGGCAGGAACCCTCGCCTCCCGGGTTCTCCCTCGGAACCCCAGCATTCTGTCGAACGAACTCACTTCCTGCTCGCTCTGCATCCagtacaggaaaaaaacaaacacacacgagCTGACGCGGGACAGAGCCGAGCCCCGCCCCCTGTCAGGGCGATCAGGTGATCCGTACACAAGCAGACGAGTGCAAGAGAGAGTGTGTaggtgtctgagtgtgtgtaggtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtctgagtgtgtgagtgtgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412023 True 1216 lncRNA 0.48 3 527948 619562
TU412026 False 413 lncRNA 0.52 4 564727 619562

Neighbor

gene id symbol gene type direction distance location
LOC113528156 LOC108255548 coding downstream 11676 475494 ~ 516272 (-)
atp8b5a LOC108255417 coding downstream 57995 440336 ~ 469953 (-)
lrp13 LOC108255551 coding downstream 142548 373450 ~ 385400 (-)
adamts12 adamts12 coding downstream 245542 261639 ~ 282406 (-)
fgf10b NA coding downstream 267725 257527 ~ 260223 (-)
pgam5 pgam5 coding upstream 33427 652989 ~ 658898 (-)
LOC113528030 LOC108255642 coding upstream 217999 837561 ~ 844476 (-)
tal2 LOC108255450 coding upstream 229824 849386 ~ 851691 (-)
LOC113524993 NA coding upstream 307547 927109 ~ 1240090 (-)
foxn4 foxn4,LOC107654613 coding upstream 357386 976948 ~ 980689 (-)
G347723 NA non-coding downstream 130498 395367 ~ 397450 (-)
G347672 NA non-coding downstream 172608 354327 ~ 355340 (-)
G347704 NA non-coding downstream 194193 333242 ~ 333755 (-)
G347703 NA non-coding downstream 198340 328914 ~ 329608 (-)
G347623 NA non-coding downstream 321655 175023 ~ 206293 (-)
G347759 NA non-coding upstream 15197 634759 ~ 638280 (-)
G347821 NA non-coding upstream 23424 642986 ~ 643487 (-)
G347833 NA non-coding upstream 53515 673077 ~ 676630 (-)
G347847 ier3 non-coding upstream 88992 708554 ~ 715445 (-)
G347859 NA non-coding upstream 123255 742817 ~ 746935 (-)
rusc2 rusc2,LOC108255549 other downstream 61693 418307 ~ 466255 (-)
LOC113528009 atp5i,atp5ib,atp5ia,LOC107703581 other downstream 160209 364006 ~ 367739 (-)
LOC117595925 NA other downstream 290676 230525 ~ 237272 (-)
LOC113528266 NA other downstream 317243 205480 ~ 210705 (-)
LOC117595911 LOC108255570 other downstream 325958 192549 ~ 201990 (-)
LOC113527995 LOC108255428 other upstream 237218 856780 ~ 924667 (-)
G347896 LOC108255572,LOC108255614,LOC108255576,LOC108255575,LOC108255573 other upstream 299822 919384 ~ 1701550 (-)
G347960 NA other upstream 457171 1076733 ~ 1079139 (-)
LOC113524981 LOC108255436,LOC108255434,LOC108255578,LOC108255576,LOC108255614,LOC108255573 other upstream 648747 1268309 ~ 1278867 (-)
LOC113524988 NA other upstream 737006 1356568 ~ 1369462 (-)

Expression


Co-expression Network