G347759


Basic Information

Item Value
gene id G347759
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 634759 ~ 638280 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU412035
acacccagacacacacccagacacatataaacacccagacacacacccagacacacacacatttacactcttCAGTTACGGCACAAAGTTGAACACAAACAGTAACAGTACGGGGTAAACAGGAAATTATTGATTTCTTCAAAcatgaacttgttttttttgtttgtttgttttttgcaaaatTGAACAAAACAGTGAAGAAGCAACATTTTGCAAGTTAAACGAAGCGCACTTCCACCCGCACTGGAGAGAATTTTCAGCCAGGAATCATCAGCATCGTTACTCAACATCCAGGACTCGACTTATTGCATCTCAGATCCGAGTCGGTGAAGACGCTCGCTCTCGTCCCTCCGAGTCAAAACAACAGAGTAGATTATTGGGTTTCCTGCTGTAACACCCGAGGAGGTGTAttaaaaacgaaaaaaaaacaacaacaaaacatgacaCTAAAACgtgcagaaataaaaagacTGGAATTTAATATGGTATTTTTCTTAAagcttaataattaataataatttacactcTATAGCCTTAAAGTGACGCTGCAGCTTTAAACTAGACCTGTGCCGATATCTGAGTTTATCAGCATCATCCTTGGTATaaatgaaggaataaaacagtgtgtgtggttctgttccaggaaaataatcaacgacggtgtggtgtaatgaagcggagtcactgttacctcCTCaaagctgattgttttcctcgaacagcacacccctaagtgttttattcctcttacaccacagcaacttaacACCCATTACAAGCTGCTATGAATTATAGAACGacgtactttttatctgtttatagttacatctaatgttgtggaaggtgggttctcacttacgttatagcagctataaacagtctgacactggagactccttccttaaatgttacatAGATTACAGAAAACCATGTCAGTGATATCAGTGTCTGCTGCACAACGTCGCCTTTTATTCGGAAAAAAAGTTTACGTTTGTCAGTGAATTGCATCATGGGATTGCTCTTTCCGAGAAGTACGCATGCTGCGCTCCTCCTGAATGGGATAAACTGGGAATGGGAAAAATTCCAACCTCCATCCCGGTGAATCCCGTCATCCTGATGAGTTGATTTTCAGCACACGTCTACTTTAAAGCGCTTGGGTTTCTTTTTAACGCAAATATTTATCTCACACATTAGATGTTTAAATGCCGAAGCTGGATATTATGTGCATTATACATAAACACGGAGATTTCTGAGCGCATGTGCGATCGTTTAGAAATCTGAAAGGAAGAGTTCGTCTCATATCGTATCGTCTCGTCTCATGCACACTCGACAGTCAGAAAGGAAAAACAGGACTGGTCAGAAACACTcgttcaacaaagaaaaaaaaaaagcaataacagtattttacatctttttctctccttttttcaaGCCGTCAGTTGTGCAATATCAATGTCTGTCAATACATCTCCtattttatgtacattataAATTACATCACACTCCACAGCGCAGAGAGATCAACTGTTTCACACTCATTTAAACCTGTACTCAAACCACCGTCCTGAGAACAGGTGGGTTTTACAGAGCGAACTGATACGGGCGTGTCAGTAATTCAGCTCCAcgataagaaaataataataataataataataataataataataataataaagtgaccAGGACAGGGTTAGGAGCGCCTCTCTATCACATCAGAGTTTCCATGCTAGCTTGAATATCGTGTTTTAATTATCGCAGTACACTGTGGAACTGATAATCAgcacacactgaactgaaagaaagaatgaatgaatgaaaagaaggATGGAGAGACAACGAAAGAACgggaaaaaatacagaatagTGCCTATCTACATAAGCCCggtgtttatgtttatttgaaCGTTTATGTTAATGAGATCAGTGAGGCGCGACCCTGTAACTTCAGCACAGTGTTGTGATGAGAGCATCGCCGCGGTGACTTTCCCTGAGGGCTGGGGCTTGAGGGCAGGGGCTTGAGGGCGGGGTTTCAGACGAGACTGAAACACGActacagagagggagggaagtTGTTTCTGGATGCGGTGCTTTTGCTCTTTACTCAGCGATTTACAGCCCTTTAACGTACAGGACACGACCAAATATGGGCGTCtgataaaccaaaataaaacaggTCCCCGAAAAGTGTGCGTCGGAATAACAgcggttctctctctctgacagacGTTTACAAAGACGTCGCCGAGTTTCCACGCCGAGCTCCCGTCGTCACGGATACATGGAATCTTTCTGGAACCGGTGCTCTTACGCATTGTTCGGCGATTTACAGCCCTTTAACTCCTGATCCACGCGAACGCTCTGAGAGTCTGAACACCAACACGGCGGTGAAATCTCAGCGACAGTCACGTGTCGATAACCTGTTACACATCGCGCACGTCACAGCGCTGCCGCTCGCCCTCCGCACTTATCTTACTGGCCAAGGTGGCGTTTACTGAGCGAGCCTCCAGCCGGACCGAGCCACCATGTTACGCCTGACCGTCTCGGGCCCTTTCCAGGTGAACTCCAGTgagtcgactctgaatcgactcactgcAGGAACTGAATCGAGATTCTGacgagctgctaaactgagccacgGGACACAAACTCCAGgaggaaattttaaaaaatcacttacttacttacacctcagatgtttttttttttctttttggtttgtatttaatttggatatgtaaatatgtgcagTGTGAACCTGAACCACTACACAGCAAACGattcaaaagaatcaatttggctctgattcagactcgaCAGATGAACAGGTGTGGAAATCTCTGATATTAGTTTTGTATTAACAGTACAATAAAAACGTCCTACTTCCCAGTGAATTCTATTGGATCAGAACCGGACTACGGGGGTCCAATAGTCACGTTATCTTATCATCACGGTTCACGATATTATTACGTCATACCCGAGCAGGTCCAAAGCACAGAACCCGGGGAGACTCCAGGTGCCCTGCGTAGGCAGCCTACTCCCAAACGGATCACTAACTAATTCTGACGCGCTCGCGTGTTGAACGCGTCGTTATTTTGTGTATTCGTCACGTGACCCTGCGTGATTTTTGGTGAATTCTAGCAACAGTTCTCCAACTTTCCACcagataaataaaagacaaaataaaagaaaaacacaaaagacaaatGAATAAAGCATTAGGTCCAACAAAAATGGGGCACGACCAAATATGGGCGTCTGATAAACGAAAATAAAACAGGTCTTTAAAAAGTGCGCGTCAGGATAAAACGTGTCCTCTCTCTGACAGACGAGACGTTTTACGAAGACGCCGTCTCTTCGGGCTGCGTTTCCTCTTCCTTATTGGACGAGCTTCCGTTGTCGTGGATACCGAGTCTCTGAAGCTCCTCCTCTGCCGTGACCCACGTCGCCACGGTGACCGTGTGCTCCTCCATCTGCTTCTGAAGACTGTCCATCTCCTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU412035 True 3498 lncRNA 0.43 2 634759 638280

Neighbor

gene id symbol gene type direction distance location
LOC113528517 LOC108255548 coding downstream 57323 523807 ~ 577436 (-)
LOC113528156 LOC108255548 coding downstream 118487 475494 ~ 516272 (-)
atp8b5a LOC108255417 coding downstream 164806 440336 ~ 469953 (-)
lrp13 LOC108255551 coding downstream 249359 373450 ~ 385400 (-)
adamts12 adamts12 coding downstream 352353 261639 ~ 282406 (-)
pgam5 pgam5 coding upstream 14709 652989 ~ 658898 (-)
LOC113528030 LOC108255642 coding upstream 199281 837561 ~ 844476 (-)
tal2 LOC108255450 coding upstream 211106 849386 ~ 851691 (-)
LOC113524993 NA coding upstream 288829 927109 ~ 1240090 (-)
foxn4 foxn4,LOC107654613 coding upstream 338668 976948 ~ 980689 (-)
G347753 NA non-coding downstream 15197 527948 ~ 619562 (-)
G347723 NA non-coding downstream 237309 395367 ~ 397450 (-)
G347672 NA non-coding downstream 279419 354327 ~ 355340 (-)
G347704 NA non-coding downstream 301004 333242 ~ 333755 (-)
G347703 NA non-coding downstream 305151 328914 ~ 329608 (-)
G347821 NA non-coding upstream 4706 642986 ~ 643487 (-)
G347833 NA non-coding upstream 34797 673077 ~ 676630 (-)
G347847 ier3 non-coding upstream 70274 708554 ~ 715445 (-)
G347859 NA non-coding upstream 104537 742817 ~ 746935 (-)
G347864 NA non-coding upstream 118753 757033 ~ 757336 (-)
rusc2 rusc2,LOC108255549 other downstream 168504 418307 ~ 466255 (-)
LOC113528009 atp5i,atp5ib,atp5ia,LOC107703581 other downstream 267020 364006 ~ 367739 (-)
LOC117595925 NA other downstream 397487 230525 ~ 237272 (-)
LOC113528266 NA other downstream 424054 205480 ~ 210705 (-)
LOC117595911 LOC108255570 other downstream 432769 192549 ~ 201990 (-)
LOC113527995 LOC108255428 other upstream 218500 856780 ~ 924667 (-)
G347896 LOC108255572,LOC108255614,LOC108255576,LOC108255575,LOC108255573 other upstream 281104 919384 ~ 1701550 (-)
G347960 NA other upstream 438453 1076733 ~ 1079139 (-)
LOC113524981 LOC108255436,LOC108255434,LOC108255578,LOC108255576,LOC108255614,LOC108255573 other upstream 630029 1268309 ~ 1278867 (-)
LOC113524988 NA other upstream 718288 1356568 ~ 1369462 (-)

Expression


Co-expression Network