LOC117595934


Basic Information

Item Value
gene id LOC117595934
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 830810 ~ 837338 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU412047
GTTGGTTACTGAGGTCGAGACGTACACAGGAGCGCAGGTTTGGTCTGAATATCTCACTCCAAAGCCGAGATATGAGGCTCTGTTTCCAACAAACTCCAGAGTTTGATGTGAATAGTGATGGTCCTGAGACACACTGCACAGCACTGTATCTCCATCTGCATGGGTGACTCAGTGACCAGGtggtacgagtgtgtgtgtgtgtgtctcagtgtgatGATCAAGTTTCAAAGCTCAACTTGGATTTCTCAGATTATAAACACAGGTCTTTGTGTGTAGGTGTTGATGTGGAGGATAAACGTCTCTACAGAAGGCACCAGGagtctggagctgtgaggaccTGCAGAGGAGCTCAGCTCATCACTACAGGTCAGAGATCACCTTTTATATTCTTAGATCATtcatatagcacttttaacattagacacaaatccagatgtagattttgaTCCATA
>XR_004577124.1
CCAcacttcagctttcatttccaaaCCTCCAGAGAGCTCTgtgaggagcagtgtgtgtCAGGAGGCATGGCCTGGACTAGATTTCCTCTTTTTACTCACTTTACCCTGAGTGTGGAAGAGCTGGAGGCTGGAACTGTTTAATGAACATCATGGAGGACTTTGCTGAAAGGAAAGTGGAGGCCATTTCATGAGTGTTGATGTGGAGGATAAACGTCTCTACAGAAGGCACCAGGagtctggagctgtgaggaccTGCAGAGGAGCTCAGCTCATCACTACAGgggcgaaaagaaaaagaagaaatgaggGACGCACCAGGATCAGAGCTCTGAAGTGGATTAAGAAGTGTTGCTTTAAGGACAGACAGATTGCT

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

RNA

RNA id representative length rna type GC content exon number start site end site
TU412047 True 452 lncRNA 0.45 2 833363 834896
XR_004577124.1 False 373 lncRNA 0.48 3 830810 837338

Neighbor

gene id symbol gene type direction distance location
pgam5 pgam5 coding downstream 171912 652989 ~ 658898 (-)
LOC113528517 LOC108255548 coding downstream 253374 523807 ~ 577436 (-)
LOC113528156 LOC108255548 coding downstream 314538 475494 ~ 516272 (-)
atp8b5a LOC108255417 coding downstream 360857 440336 ~ 469953 (-)
lrp13 LOC108255551 coding downstream 445410 373450 ~ 385400 (-)
LOC113528030 LOC108255642 coding upstream 223 837561 ~ 844476 (-)
tal2 LOC108255450 coding upstream 12048 849386 ~ 851691 (-)
LOC113524993 NA coding upstream 89771 927109 ~ 1240090 (-)
foxn4 foxn4,LOC107654613 coding upstream 139610 976948 ~ 980689 (-)
kctd10 kctd10,LOC107595924,LOC107597295,LOC107752136,LOC107672630 coding upstream 168302 1005640 ~ 1009594 (-)
LOC117595935 NA non-coding downstream 969 826664 ~ 829841 (-)
G347868 NA non-coding downstream 64214 766065 ~ 766596 (-)
G347866 NA non-coding downstream 65442 763323 ~ 765368 (-)
G347864 NA non-coding downstream 73474 757033 ~ 757336 (-)
G347859 NA non-coding downstream 83875 742817 ~ 746935 (-)
G347955 NA non-coding upstream 199201 1036539 ~ 1038197 (-)
G347959 NA non-coding upstream 232380 1069718 ~ 1464481 (-)
G347963 NA non-coding upstream 246414 1083752 ~ 1102884 (-)
G347969 NA non-coding upstream 257696 1095034 ~ 1277213 (-)
G347980 fam222a non-coding upstream 336779 1174117 ~ 1177170 (-)
rusc2 rusc2,LOC108255549 other downstream 364555 418307 ~ 466255 (-)
LOC113528009 atp5i,atp5ib,atp5ia,LOC107703581 other downstream 463071 364006 ~ 367739 (-)
LOC117595925 NA other downstream 593538 230525 ~ 237272 (-)
LOC113528266 NA other downstream 620105 205480 ~ 210705 (-)
LOC117595911 LOC108255570 other downstream 628820 192549 ~ 201990 (-)
LOC113527995 LOC108255428 other upstream 19442 856780 ~ 924667 (-)
G347896 LOC108255572,LOC108255614,LOC108255576,LOC108255575,LOC108255573 other upstream 82046 919384 ~ 1701550 (-)
G347960 NA other upstream 239395 1076733 ~ 1079139 (-)
LOC113524981 LOC108255436,LOC108255434,LOC108255578,LOC108255576,LOC108255614,LOC108255573 other upstream 430971 1268309 ~ 1278867 (-)
LOC113524988 NA other upstream 519230 1356568 ~ 1369462 (-)

Expression


Co-expression Network